Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 RNU6-323P-201ENST00000521915 107 ntBASIC0.3□□□□□ -2.36
UPF3BQ9BZI7 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.3□□□□□ -2.36
UPF3BQ9BZI7 MIR4703-201ENST00000577728 79 ntBASIC0.3□□□□□ -2.36
UPF3BQ9BZI7 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.3□□□□□ -2.36
UPF3BQ9BZI7 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.3□□□□□ -2.36
UPF3BQ9BZI7 RNU6-923P-201ENST00000364753 107 ntBASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 Y_RNA.303-201ENST00000364998 94 ntBASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 MIR32-201ENST00000384965 70 ntBASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 RNA5SP494-201ENST00000410653 129 ntBASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 RNA5SP504-201ENST00000410676 117 ntBASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 RPS3AP3-201ENST00000411933 242 ntBASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 RPL23AP50-201ENST00000434149 455 ntBASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 MTCO1P19-201ENST00000443487 500 ntBASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 TPT1P7-201ENST00000458300 517 ntBASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 RNA5SP134-201ENST00000516492 96 ntBASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 AL136317.1-201ENST00000612653 226 ntBASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 MIR6718-201ENST00000616153 80 ntBASIC0.29□□□□□ -2.36
UPF3BQ9BZI7 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 MIR329-1-201ENST00000385028 80 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 RNU6-1186P-201ENST00000410429 97 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 AC098592.1-201ENST00000419352 333 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 snoU13.25-201ENST00000458945 104 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 RNU7-167P-201ENST00000459160 62 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 RNU6-1037P-201ENST00000459571 107 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 RPS29P27-201ENST00000463711 170 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 MTND4LP26-201ENST00000518144 282 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 MIR5190-201ENST00000581537 80 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 AL096861.1-201ENST00000610899 123 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 AC093913.1-201ENST00000614178 329 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 AC137590.2-201ENST00000619709 240 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 AC139792.3-201ENST00000623525 224 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 MTND4P4-201ENST00000439033 1366 ntBASIC0.28□□□□□ -2.36
UPF3BQ9BZI7 RNU1-119P-201ENST00000391122 165 ntBASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 MTCYBP10-201ENST00000424905 650 ntBASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 STAG3L5P-204ENST00000443759 179 ntBASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 SCARNA18-201ENST00000459004 134 ntBASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 RNU6-612P-201ENST00000516909 102 ntBASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 MTND2P32-201ENST00000521584 1038 ntBASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 NDUFAF4P1-201ENST00000559425 519 ntBASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 FGF7P1-201ENST00000582820 288 ntBASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.27□□□□□ -2.37
UPF3BQ9BZI7 SNORA2A-201ENST00000383885 135 ntBASIC0.26□□□□□ -2.37
UPF3BQ9BZI7 RNU6-793P-201ENST00000384233 104 ntBASIC0.26□□□□□ -2.37
UPF3BQ9BZI7 MIR562-201ENST00000384894 95 ntBASIC0.26□□□□□ -2.37
UPF3BQ9BZI7 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.26□□□□□ -2.37
UPF3BQ9BZI7 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.26□□□□□ -2.37
UPF3BQ9BZI7 MIR5093-201ENST00000583199 100 ntBASIC0.26□□□□□ -2.37
UPF3BQ9BZI7 RNU6-85P-201ENST00000605989 107 ntBASIC0.26□□□□□ -2.37
UPF3BQ9BZI7 AC006566.1-201ENST00000608943 513 ntBASIC0.26□□□□□ -2.37
UPF3BQ9BZI7 AP000240.1-201ENST00000609910 452 ntBASIC0.26□□□□□ -2.37
UPF3BQ9BZI7 RNU6-348P-201ENST00000384386 107 ntBASIC0.25□□□□□ -2.37
UPF3BQ9BZI7 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.25□□□□□ -2.37
UPF3BQ9BZI7 CALM2P4-201ENST00000430810 426 ntBASIC0.25□□□□□ -2.37
UPF3BQ9BZI7 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC0.25□□□□□ -2.37
UPF3BQ9BZI7 CYCTP-201ENST00000504253 315 ntBASIC0.25□□□□□ -2.37
UPF3BQ9BZI7 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.25□□□□□ -2.37
UPF3BQ9BZI7 AP003716.2-201ENST00000528260 108 ntBASIC0.25□□□□□ -2.37
UPF3BQ9BZI7 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC0.25□□□□□ -2.37
UPF3BQ9BZI7 AC131055.1-201ENST00000584626 316 ntBASIC0.25□□□□□ -2.37
UPF3BQ9BZI7 SEPT14P17-201ENST00000617978 177 ntBASIC0.25□□□□□ -2.37
UPF3BQ9BZI7 7SK.10-201ENST00000621414 298 ntBASIC0.25□□□□□ -2.37
UPF3BQ9BZI7 AC006435.5-201ENST00000624486 112 ntBASIC0.25□□□□□ -2.37
UPF3BQ9BZI7 RNA5SP264-201ENST00000363115 107 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 RNA5SP98-201ENST00000363158 137 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 Y_RNA.185-201ENST00000363894 100 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 RNU6-1327P-201ENST00000365302 105 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 RNU6-245P-201ENST00000384020 107 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 U8.16-201ENST00000391279 133 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 RNU2-29P-201ENST00000410423 189 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 AC244098.3-201ENST00000424803 96 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 AL162725.1-201ENST00000435405 301 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 DAP3P1-201ENST00000441522 278 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 SNORA68.3-201ENST00000515906 83 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 SCARNA4-201ENST00000629045 128 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 MTND5P16-201ENST00000460269 1703 ntBASIC0.24□□□□□ -2.37
UPF3BQ9BZI7 RNY4P3-201ENST00000365254 95 ntBASIC0.23□□□□□ -2.37
UPF3BQ9BZI7 MIR1185-2-201ENST00000408687 86 ntBASIC0.23□□□□□ -2.37
UPF3BQ9BZI7 Z95118.1-201ENST00000421372 247 ntBASIC0.23□□□□□ -2.37
UPF3BQ9BZI7 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.23□□□□□ -2.37
UPF3BQ9BZI7 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC0.23□□□□□ -2.37
UPF3BQ9BZI7 AC093850.1-201ENST00000454121 251 ntBASIC0.23□□□□□ -2.37
UPF3BQ9BZI7 RPS29P15-201ENST00000458329 171 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms