Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL606534.2-204ENST00000635008 178 ntBASIC1.68□□□□□ -2.14
CCDC28BQ9BUN5 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 U3.8-201ENST00000363675 217 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.394-201ENST00000383942 103 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-474P-201ENST00000384243 107 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 RNY1P14-201ENST00000384426 108 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-1235P-201ENST00000384559 107 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 HMGN2P39-201ENST00000398005 273 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 MIR548P-201ENST00000408336 84 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 RNA5SP504-201ENST00000410676 117 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 MTCO1P44-201ENST00000441935 243 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 AC010095.1-201ENST00000443543 144 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-498P-201ENST00000459468 107 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 AL049873.1-201ENST00000480540 376 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 RPS29P11-201ENST00000496507 171 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 AC074133.1-201ENST00000515696 183 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-948P-201ENST00000516374 107 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 RNU4-77P-201ENST00000516692 156 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 AC044792.1-201ENST00000593294 196 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 MZT1P2-201ENST00000604387 248 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 AC025754.2-201ENST00000606491 432 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 AC022202.1-201ENST00000613515 211 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 AL078596.1-201ENST00000624856 447 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 LINC02555-201ENST00000563933 1951 ntBASIC1.67□□□□□ -2.14
CCDC28BQ9BUN5 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.27-201ENST00000362540 103 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-1305P-201ENST00000364353 104 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-1164P-201ENST00000364428 107 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 RNU6-318P-201ENST00000384283 103 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 Y_RNA.526-201ENST00000384572 110 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 MIR9-3-201ENST00000385084 90 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 AL079342.1-201ENST00000401460 267 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 AC019129.1-201ENST00000403786 261 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 MIR1302-11-201ENST00000408051 138 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 MIR1302-9-201ENST00000408365 138 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 MIR1302-10-201ENST00000408734 138 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 AL354751.2-201ENST00000415471 210 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 MCFD2P1-201ENST00000417812 300 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 PMCHL1-202ENST00000423102 261 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 HSPE1P21-201ENST00000438283 308 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 PCNPP5-201ENST00000452246 481 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 RNU1-98P-201ENST00000458992 160 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 RNU7-169P-201ENST00000459456 61 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 SNORA25.10-201ENST00000515926 124 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 RNU1-117P-201ENST00000517041 158 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 RN7SKP295-201ENST00000517264 153 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 AC006600.1-201ENST00000572529 153 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 MIR1302-2-201ENST00000607096 138 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 AC006157.1-201ENST00000611750 366 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 AC083806.3-201ENST00000614016 455 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.66□□□□□ -2.14
CCDC28BQ9BUN5 MIR340-201ENST00000362125 95 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 Y_RNA.28-201ENST00000362554 111 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 RNA5SP361-201ENST00000362686 118 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 Y_RNA.80-201ENST00000362996 102 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 Y_RNA.138-201ENST00000363462 102 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 RNY3P11-201ENST00000364153 102 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 AC117470.1-201ENST00000381974 330 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 RNU6-1227P-201ENST00000383981 107 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 MIR518A2-201ENST00000384966 87 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 RNA5SP465-201ENST00000391195 109 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 MTCYBP6-201ENST00000441810 138 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 MTND4P19-201ENST00000446659 478 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 CHEK2P4-201ENST00000450340 246 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 AC010531.2-201ENST00000465012 153 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 AC093852.1-201ENST00000503587 266 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 RNU6-988P-201ENST00000519081 107 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 AC130454.1-201ENST00000622948 401 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 WWP1P1-201ENST00000466609 2769 ntBASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
CCDC28BQ9BUN5 RNU1-58P-201ENST00000362413 163 ntBASIC1.64□□□□□ -2.15
CCDC28BQ9BUN5 RNU6-727P-201ENST00000363592 107 ntBASIC1.64□□□□□ -2.15
CCDC28BQ9BUN5 Y_RNA.415-201ENST00000384012 112 ntBASIC1.64□□□□□ -2.15
CCDC28BQ9BUN5 SNORD78.2-201ENST00000391076 69 ntBASIC1.64□□□□□ -2.15
CCDC28BQ9BUN5 SNORD12B-201ENST00000410433 91 ntBASIC1.64□□□□□ -2.15
CCDC28BQ9BUN5 RNA5SP450-201ENST00000411206 102 ntBASIC1.64□□□□□ -2.15
CCDC28BQ9BUN5 AC244636.1-201ENST00000421152 228 ntBASIC1.64□□□□□ -2.15
CCDC28BQ9BUN5 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.64□□□□□ -2.15
CCDC28BQ9BUN5 AC139712.2-201ENST00000424302 339 ntBASIC1.64□□□□□ -2.15
CCDC28BQ9BUN5 AC005534.2-201ENST00000431047 433 ntBASIC1.64□□□□□ -2.15
CCDC28BQ9BUN5 AL160004.2-201ENST00000432935 350 ntBASIC1.64□□□□□ -2.15
CCDC28BQ9BUN5 AC003989.2-201ENST00000440224 169 ntBASIC1.64□□□□□ -2.15
CCDC28BQ9BUN5 UQCRBP2-201ENST00000447827 297 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 137.6 ms