Protein–RNA interactions for Protein: Q9BQ90

KLHDC3, Kelch domain-containing protein 3, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC3Q9BQ90 AL445305.1-201ENST00000432577 575 ntBASIC1.25□□□□□ -2.21
KLHDC3Q9BQ90 SNRPGP13-201ENST00000442212 177 ntBASIC1.25□□□□□ -2.21
KLHDC3Q9BQ90 snoU13.27-201ENST00000459278 104 ntBASIC1.25□□□□□ -2.21
KLHDC3Q9BQ90 AC091179.3-201ENST00000474761 144 ntBASIC1.25□□□□□ -2.21
KLHDC3Q9BQ90 AC004223.1-201ENST00000479840 271 ntBASIC1.25□□□□□ -2.21
KLHDC3Q9BQ90 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.25□□□□□ -2.21
KLHDC3Q9BQ90 RNU6-1016P-201ENST00000516689 94 ntBASIC1.25□□□□□ -2.21
KLHDC3Q9BQ90 Y_RNA.706-201ENST00000516933 99 ntBASIC1.25□□□□□ -2.21
KLHDC3Q9BQ90 AL160236.1-201ENST00000556317 195 ntBASIC1.25□□□□□ -2.21
KLHDC3Q9BQ90 AC100812.1-201ENST00000607622 580 ntBASIC1.25□□□□□ -2.21
KLHDC3Q9BQ90 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.25□□□□□ -2.21
KLHDC3Q9BQ90 AP000648.3-201ENST00000623539 4507 ntBASIC1.25□□□□□ -2.21
KLHDC3Q9BQ90 AC100821.1-201ENST00000523153 2479 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 RNA5SP432-201ENST00000362480 116 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 U8.1-201ENST00000362843 134 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 Y_RNA.179-201ENST00000363844 90 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 Y_RNA.415-201ENST00000384012 112 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 SNORD26-201ENST00000384147 75 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 MIR10B-201ENST00000385011 110 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 RNU1-139P-201ENST00000391307 165 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 MIR548K-201ENST00000408406 116 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 MIR1185-2-201ENST00000408687 86 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 AP1B1P2-201ENST00000416196 106 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 MTND3P23-201ENST00000431980 347 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 AC073910.1-201ENST00000445047 438 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 FGF7P6-202ENST00000451282 293 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 RNU6-1114P-201ENST00000516022 107 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 RNU6-358P-201ENST00000516564 75 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 AL161670.1-201ENST00000554348 137 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 AP000942.3-201ENST00000603702 160 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 AC080078.2-201ENST00000603766 501 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 AL355802.3-201ENST00000607571 545 ntBASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
KLHDC3Q9BQ90 RNU6-727P-201ENST00000363592 107 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 RNA5SP323-201ENST00000391094 133 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 RNU1-78P-201ENST00000391248 165 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 AC074085.1-201ENST00000413598 418 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 COX6CP10-201ENST00000416832 224 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 USP9YP16-201ENST00000430287 407 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 AC245517.4-201ENST00000448601 281 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 USP9YP23-201ENST00000455085 407 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 AC069439.1-201ENST00000494739 167 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 AC026782.1-201ENST00000512952 449 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 CBX3P8-201ENST00000532412 525 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 AK6P2-201ENST00000549020 471 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 SUB1P3-201ENST00000564581 315 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 AC022432.1-201ENST00000595739 310 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 AC010999.1-201ENST00000611856 324 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 AL133216.2-202ENST00000634512 349 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 ICE2P2-201ENST00000483823 2787 ntBASIC1.23□□□□□ -2.21
KLHDC3Q9BQ90 MIR302D-201ENST00000362275 68 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 RNU6-1266P-201ENST00000362794 105 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 RNA5SP467-201ENST00000391274 118 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 MIR548F5-201ENST00000408421 86 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 AL161935.2-201ENST00000414627 60 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 RPS3AP52-201ENST00000435639 297 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 AL603825.1-201ENST00000438481 80 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 RNU1-123P-201ENST00000458950 160 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 RNA5SP445-201ENST00000515889 115 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 AL121579.1-201ENST00000555129 305 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 MIR5701-3-201ENST00000578890 82 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 MIR5695-201ENST00000579717 85 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 MIR5701-1-201ENST00000585138 82 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 AC011712.1-201ENST00000588959 234 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 AL359075.3-201ENST00000613288 217 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 MIR5701-2-201ENST00000615634 82 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 ZNF209P-201ENST00000593450 2304 ntBASIC1.22□□□□□ -2.21
KLHDC3Q9BQ90 RNU6-271P-201ENST00000363858 105 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 RNU6-950P-201ENST00000384651 107 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 Y_RNA.594-201ENST00000410373 140 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 AC107399.1-201ENST00000451226 265 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 RPS26P55-201ENST00000471178 356 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 RPS26P45-201ENST00000471748 340 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 HMGN1P12-201ENST00000499125 195 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 Y_RNA.683-201ENST00000516508 93 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 RNU1-142P-201ENST00000516682 145 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 AC008269.2-201ENST00000561915 1105 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 MIR4709-201ENST00000577272 72 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 MIR4421-201ENST00000578133 69 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 MZT1P2-201ENST00000604387 248 ntBASIC1.21□□□□□ -2.22
KLHDC3Q9BQ90 AP001485.1-201ENST00000604799 199 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms