Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 MRPL42P3-201ENST00000401492 326 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 RNA5SP504-201ENST00000410676 117 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 AC113618.1-201ENST00000416747 285 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 AC010095.1-201ENST00000443543 144 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 AL137159.1-201ENST00000452808 512 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 AC112492.4-201ENST00000456549 352 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 AC091179.3-201ENST00000474761 144 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 AC010469.2-201ENST00000496412 480 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 RNU6-250P-201ENST00000516958 103 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 AC144568.1-201ENST00000520139 137 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 AC022616.8-201ENST00000533569 253 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.9□□□□□ -2.11
USP28Q96RU2 NDUFA5P6-201ENST00000542110 379 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 MIR3122-201ENST00000577243 73 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 MIR5006-201ENST00000583027 110 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 AC104695.3-201ENST00000604052 296 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.9□□□□□ -2.11
USP28Q96RU2 MIR6845-201ENST00000613182 61 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.9□□□□□ -2.11
USP28Q96RU2 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
USP28Q96RU2 AC005592.1-201ENST00000566527 1640 ntBASIC1.89□□□□□ -2.11
USP28Q96RU2 Y_RNA.39-201ENST00000362620 98 ntBASIC1.89□□□□□ -2.11
USP28Q96RU2 RNU6-879P-201ENST00000364328 108 ntBASIC1.89□□□□□ -2.11
USP28Q96RU2 RNU6-26P-201ENST00000383985 107 ntBASIC1.89□□□□□ -2.11
USP28Q96RU2 Y_RNA.527-201ENST00000384573 102 ntBASIC1.89□□□□□ -2.11
USP28Q96RU2 AC244636.1-201ENST00000421152 228 ntBASIC1.89□□□□□ -2.11
USP28Q96RU2 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.89□□□□□ -2.11
USP28Q96RU2 RNU6-988P-201ENST00000519081 107 ntBASIC1.89□□□□□ -2.11
USP28Q96RU2 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.89□□□□□ -2.11
USP28Q96RU2 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.89□□□□□ -2.11
USP28Q96RU2 HSBP1P1-201ENST00000555205 166 ntBASIC1.89□□□□□ -2.11
USP28Q96RU2 MIR4680-201ENST00000580906 66 ntBASIC1.89□□□□□ -2.11
USP28Q96RU2 VN1R91P-201ENST00000594377 169 ntBASIC1.89□□□□□ -2.11
USP28Q96RU2 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.89□□□□□ -2.11
USP28Q96RU2 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.89□□□□□ -2.11
USP28Q96RU2 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
USP28Q96RU2 RNU6-545P-201ENST00000362681 104 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 RNU1-76P-201ENST00000362903 159 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 SNORA63-201ENST00000363450 132 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 SNORD87-201ENST00000364849 89 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 Y_RNA.415-201ENST00000384012 112 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 RNU6-926P-201ENST00000384075 107 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 MIR329-1-201ENST00000385028 80 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 CBX3P6-201ENST00000430257 527 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.88□□□□□ -2.11
USP28Q96RU2 SNORA25.10-201ENST00000515926 124 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 RNU6-991P-201ENST00000516168 107 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 RNU5F-4P-201ENST00000516581 114 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 RNA5SP54-201ENST00000516951 92 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 RNU1-117P-201ENST00000517041 158 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 CBX3P4-201ENST00000538909 354 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.88□□□□□ -2.11
USP28Q96RU2 AK6P2-201ENST00000549020 471 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 RRN3P3-201ENST00000549207 578 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.88□□□□□ -2.11
USP28Q96RU2 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.88□□□□□ -2.11
USP28Q96RU2 Y_RNA.812-201ENST00000610788 101 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 Y_RNA.784-201ENST00000613803 101 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 AL773524.1-201ENST00000614065 229 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 AC011476.5-201ENST00000615594 130 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 Y_RNA.787-201ENST00000616522 101 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 Y_RNA.780-201ENST00000617336 101 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 Y_RNA.801-201ENST00000619005 101 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 U6.92-201ENST00000636464 89 ntBASIC1.88□□□□□ -2.11
USP28Q96RU2 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
USP28Q96RU2 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
USP28Q96RU2 Y_RNA.202-201ENST00000364083 110 ntBASIC1.87□□□□□ -2.11
USP28Q96RU2 MIR628-201ENST00000385229 95 ntBASIC1.87□□□□□ -2.11
USP28Q96RU2 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
USP28Q96RU2 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.87□□□□□ -2.11
USP28Q96RU2 MTND2P29-201ENST00000438595 412 ntBASIC1.87□□□□□ -2.11
USP28Q96RU2 RNU7-14P-201ENST00000459331 62 ntBASIC1.87□□□□□ -2.11
USP28Q96RU2 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.87□□□□□ -2.11
USP28Q96RU2 AL442163.3-201ENST00000554110 156 ntBASIC1.87□□□□□ -2.11
USP28Q96RU2 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.87□□□□□ -2.11
USP28Q96RU2 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.87□□□□□ -2.11
USP28Q96RU2 AC010999.1-201ENST00000611856 324 ntBASIC1.87□□□□□ -2.11
USP28Q96RU2 TCL6_2.1-201ENST00000615162 119 ntBASIC1.87□□□□□ -2.11
USP28Q96RU2 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
USP28Q96RU2 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
USP28Q96RU2 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
USP28Q96RU2 AL356292.1-201ENST00000283110 373 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 RNU6-137P-201ENST00000363680 108 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 SNORA63C-201ENST00000364578 129 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 SNORA67.2-201ENST00000384300 149 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 RNU6-823P-201ENST00000391042 103 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 AL033519.2-201ENST00000403958 392 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 RPL31P63-201ENST00000422565 375 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.86□□□□□ -2.11
USP28Q96RU2 AC009237.7-201ENST00000447357 229 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 HMGN2P18-201ENST00000450680 270 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.86□□□□□ -2.11
USP28Q96RU2 SNORA40.14-201ENST00000516543 86 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 AC040926.1-201ENST00000530195 238 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 AC026470.2-201ENST00000561492 181 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 SNRPGP20-201ENST00000604477 205 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 AC025754.2-201ENST00000606491 432 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 AL021879.1-201ENST00000611756 288 ntBASIC1.86□□□□□ -2.11
USP28Q96RU2 PART1_1.1-201ENST00000611761 217 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms