Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 Y_RNA.587-201ENST00000391210 103 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 Y_RNA.622-201ENST00000411091 108 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 ATP5A1P2-201ENST00000412323 255 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 AC006461.1-201ENST00000412637 326 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 AC006989.1-201ENST00000427212 131 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 AC233266.1-201ENST00000454518 96 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 MIR4431-201ENST00000579990 94 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 MIR4444-1-201ENST00000581696 74 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 MIR4444-2-201ENST00000584390 74 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC140Q96MF4 AC242852.1-201ENST00000612151 96 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 MIR6075-201ENST00000620782 95 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 AC244015.1-201ENST00000622301 99 ntBASIC2.8□□□□□ -1.96
CCDC140Q96MF4 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC140Q96MF4 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC2.8□□□□□ -1.96
CCDC140Q96MF4 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC2.79□□□□□ -1.96
CCDC140Q96MF4 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC140Q96MF4 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
CCDC140Q96MF4 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC140Q96MF4 RNA5SP124-201ENST00000362739 110 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 SNORD56.5-201ENST00000364281 72 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 Y_RNA.580-201ENST00000391004 95 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 RNU6-1228P-201ENST00000391014 107 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 RHEBP3-201ENST00000411920 351 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 RPS15AP28-201ENST00000435088 386 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 YWHAEP4-201ENST00000505390 198 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 AC011604.1-201ENST00000545978 196 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC2.79□□□□□ -1.96
CCDC140Q96MF4 AL031274.2-201ENST00000599419 203 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 AC008739.3-201ENST00000603262 127 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 AL391903.3-201ENST00000612158 163 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 AL121772.2-201ENST00000614331 297 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 MIR338-201ENST00000636369 67 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC140Q96MF4 IDE-202ENST00000371581 4480 ntTSL 2 BASIC2.79□□□□□ -1.96
CCDC140Q96MF4 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.79□□□□□ -1.96
CCDC140Q96MF4 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC140Q96MF4 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC2.79□□□□□ -1.96
CCDC140Q96MF4 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC140Q96MF4 AL157777.2-201ENST00000258070 137 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 SNORD9-201ENST00000362566 104 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 RNU6-674P-201ENST00000363831 107 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 RNU6-151P-201ENST00000364158 107 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 RNU1-96P-201ENST00000364163 162 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 RNU6-818P-201ENST00000364837 108 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 MIR15B-201ENST00000385045 98 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 RNU6-239P-201ENST00000390990 99 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 RNA5SP323-201ENST00000391094 133 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 AL512604.1-201ENST00000404812 257 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 AL035423.1-201ENST00000420331 213 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 ATP5J2P3-201ENST00000451550 258 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 RNU7-99P-201ENST00000516271 62 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 RNU6-579P-201ENST00000516879 102 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 RNU6-1096P-201ENST00000517089 102 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 CYCSP26-201ENST00000534107 320 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 AC026271.5-201ENST00000577873 130 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 MIR3910-1-201ENST00000580936 111 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 AC007229.1-201ENST00000590455 412 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 AL049861.1-201ENST00000603130 150 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 AC093732.2-201ENST00000607950 274 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 AL359075.3-201ENST00000613288 217 ntBASIC2.78□□□□□ -1.96
CCDC140Q96MF4 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC140Q96MF4 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
CCDC140Q96MF4 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC2.78□□□□□ -1.96
CCDC140Q96MF4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.97
CCDC140Q96MF4 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC140Q96MF4 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
CCDC140Q96MF4 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC140Q96MF4 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC2.77□□□□□ -1.97
CCDC140Q96MF4 SNORA38-201ENST00000363946 132 ntBASIC2.77□□□□□ -1.97
CCDC140Q96MF4 RNA5SP493-201ENST00000364115 91 ntBASIC2.77□□□□□ -1.97
CCDC140Q96MF4 RNU6-728P-201ENST00000365375 104 ntBASIC2.77□□□□□ -1.97
CCDC140Q96MF4 RPS29P31-201ENST00000446147 164 ntBASIC2.77□□□□□ -1.97
CCDC140Q96MF4 AL133547.1-201ENST00000448546 220 ntBASIC2.77□□□□□ -1.97
CCDC140Q96MF4 AL109933.2-201ENST00000452651 260 ntBASIC2.77□□□□□ -1.97
CCDC140Q96MF4 AC005840.1-201ENST00000498412 377 ntBASIC2.77□□□□□ -1.97
CCDC140Q96MF4 RNU1-142P-201ENST00000516682 145 ntBASIC2.77□□□□□ -1.97
CCDC140Q96MF4 SNORA70.18-201ENST00000516696 98 ntBASIC2.77□□□□□ -1.97
CCDC140Q96MF4 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC140Q96MF4 RPL23AP91-201ENST00000569211 455 ntBASIC2.77□□□□□ -1.97
CCDC140Q96MF4 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC140Q96MF4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC140Q96MF4 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.77□□□□□ -1.97
CCDC140Q96MF4 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC140Q96MF4 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
CCDC140Q96MF4 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC140Q96MF4 RNU6-862P-201ENST00000362804 105 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 SNORA33-201ENST00000363664 130 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 Y_RNA.203-201ENST00000364106 102 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 Y_RNA.267-201ENST00000364679 109 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 RNY1P5-201ENST00000383890 115 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 SNORA19-201ENST00000384737 128 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC140Q96MF4 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC140Q96MF4 AL353689.1-201ENST00000438895 199 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 AC245102.2-201ENST00000448956 180 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 RNU1-131P-201ENST00000458943 161 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 RN7SL594P-201ENST00000470590 287 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 AC106707.2-201ENST00000484182 374 ntBASIC2.76□□□□□ -1.97
CCDC140Q96MF4 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms