Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
CHFRQ96EP1 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CHFRQ96EP1 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CHFRQ96EP1 AC004944.1-201ENST00000517807 3059 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CHFRQ96EP1 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CHFRQ96EP1 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
CHFRQ96EP1 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.97□□□□□ -1.93
CHFRQ96EP1 RNU6-801P-201ENST00000364087 105 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 SNORA51.4-201ENST00000364993 124 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
CHFRQ96EP1 RNU6-476P-201ENST00000384726 107 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 Y_RNA.572-201ENST00000384757 98 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 RNU6-460P-201ENST00000391158 108 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.97□□□□□ -1.93
CHFRQ96EP1 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.97□□□□□ -1.93
CHFRQ96EP1 snoU13.6-201ENST00000458785 104 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 RPL30P12-201ENST00000474666 353 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.97□□□□□ -1.93
CHFRQ96EP1 SCARNA8-201ENST00000515924 131 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 RN7SKP164-201ENST00000516138 266 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 AC016256.1-201ENST00000547971 354 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.97□□□□□ -1.93
CHFRQ96EP1 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.97□□□□□ -1.93
CHFRQ96EP1 MIR3945-201ENST00000581853 98 ntBASIC2.97□□□□□ -1.93
CHFRQ96EP1 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.97□□□□□ -1.93
CHFRQ96EP1 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.97□□□□□ -1.93
CHFRQ96EP1 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
CHFRQ96EP1 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.97□□□□□ -1.93
CHFRQ96EP1 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC2.96□□□□□ -1.94
CHFRQ96EP1 RNU4-82P-201ENST00000362443 140 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 Y_RNA.329-201ENST00000365209 107 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 RNU6-147P-201ENST00000383983 107 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 RNU6-1144P-201ENST00000384247 104 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 RNU2-54P-201ENST00000410299 190 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 RNU2-68P-201ENST00000410878 191 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 AC009963.1-201ENST00000417265 157 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 AC244505.4-201ENST00000434905 287 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 SSXP5-201ENST00000443473 287 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 RPL23AP70-201ENST00000483361 460 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 RNU6-589P-201ENST00000516485 107 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 RNU6-453P-201ENST00000516819 85 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 AC109810.1-201ENST00000534066 224 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 TRAV28-201ENST00000557548 323 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.96□□□□□ -1.94
CHFRQ96EP1 AL138963.2-201ENST00000605137 226 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 AC011603.4-201ENST00000611325 277 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 U6.99-201ENST00000637524 83 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CHFRQ96EP1 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
CHFRQ96EP1 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
CHFRQ96EP1 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CHFRQ96EP1 MTND5P35-201ENST00000557537 1720 ntBASIC2.96□□□□□ -1.94
CHFRQ96EP1 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.95□□□□□ -1.94
CHFRQ96EP1 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CHFRQ96EP1 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.95□□□□□ -1.94
CHFRQ96EP1 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
CHFRQ96EP1 RNU6-199P-201ENST00000362954 107 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 RNU6-270P-201ENST00000364131 105 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 SNORA9.2-201ENST00000365361 133 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 RNU6-142P-201ENST00000384019 107 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 RNU6-376P-201ENST00000384731 106 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 SNORA26.5-201ENST00000391215 123 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.95□□□□□ -1.94
CHFRQ96EP1 AC092427.1-202ENST00000430569 476 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 AC112220.1-201ENST00000434628 355 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 AC007969.2-201ENST00000441891 191 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 RPL31P41-201ENST00000477967 372 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 RNU6-1198P-201ENST00000516904 67 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 RNU6-703P-201ENST00000516946 107 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 AP004607.1-201ENST00000524456 203 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 AC107016.2-201ENST00000547968 190 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 AC009127.3-201ENST00000570531 403 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 AC023043.3-201ENST00000593113 385 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.95□□□□□ -1.94
CHFRQ96EP1 AC136601.2-201ENST00000604356 474 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 AC013412.1-201ENST00000610687 192 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CHFRQ96EP1 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CHFRQ96EP1 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.95□□□□□ -1.94
CHFRQ96EP1 AC022336.2-201ENST00000568966 2538 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
CHFRQ96EP1 GABRG2-229ENST00000641017 3628 ntBASIC2.95□□□□□ -1.94
CHFRQ96EP1 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.95□□□□□ -1.94
CHFRQ96EP1 AC093831.2-201ENST00000624393 3427 ntBASIC2.94□□□□□ -1.94
CHFRQ96EP1 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.94□□□□□ -1.94
CHFRQ96EP1 RNU6-103P-201ENST00000363686 107 ntBASIC2.94□□□□□ -1.94
CHFRQ96EP1 RNU1-112P-201ENST00000364401 164 ntBASIC2.94□□□□□ -1.94
CHFRQ96EP1 Y_RNA.337-201ENST00000365312 102 ntBASIC2.94□□□□□ -1.94
CHFRQ96EP1 Y_RNA.498-201ENST00000384460 102 ntBASIC2.94□□□□□ -1.94
CHFRQ96EP1 SNORA46-201ENST00000384762 135 ntBASIC2.94□□□□□ -1.94
CHFRQ96EP1 MIR626-201ENST00000385032 94 ntBASIC2.94□□□□□ -1.94
CHFRQ96EP1 MIR549A-201ENST00000385268 96 ntBASIC2.94□□□□□ -1.94
CHFRQ96EP1 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.94□□□□□ -1.94
CHFRQ96EP1 RPL26P27-201ENST00000414397 437 ntBASIC2.94□□□□□ -1.94
CHFRQ96EP1 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.94□□□□□ -1.94
CHFRQ96EP1 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 170.4 ms