Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.99□□□□□ -1.93
CLIP3Q96DZ5 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 RNU6-944P-201ENST00000364023 107 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 RNU4-84P-201ENST00000364200 139 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.238-201ENST00000364441 102 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 SNORD32B-201ENST00000364460 84 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 SNORA71.1-201ENST00000364523 117 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 RNU6-449P-201ENST00000383914 107 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 SNORA7.4-201ENST00000384249 137 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 MIR549A-201ENST00000385268 96 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 RNU2-2P-201ENST00000410396 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.637-201ENST00000459424 114 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 S100A11P2-201ENST00000467589 312 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 AC008885.1-201ENST00000514930 301 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 RNU6-62P-201ENST00000516526 102 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 SCARNA13-201ENST00000516672 275 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 DEFB117-201ENST00000602356 141 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 RNU2-4P-201ENST00000606190 192 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 U2.15-201ENST00000611544 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 U2.16-201ENST00000613119 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 U2.12-201ENST00000613778 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 U2.9-201ENST00000615427 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 U2.11-201ENST00000616345 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 U2.2-201ENST00000616535 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 U2.3-201ENST00000617785 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 U2.19-201ENST00000618602 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 RNU2-1-201ENST00000618664 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 U2.6-201ENST00000619225 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 U2.5-201ENST00000619465 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 U2.10-201ENST00000620268 191 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 AC068700.1-201ENST00000565862 3754 ntBASIC2.98□□□□□ -1.93
CLIP3Q96DZ5 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.7-201ENST00000362352 102 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.23-201ENST00000362496 106 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.75-201ENST00000362927 97 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.215-201ENST00000364204 112 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 RNU6-312P-201ENST00000364629 107 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.343-201ENST00000365354 112 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 Y_RNA.488-201ENST00000384403 102 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 RNU6-1154P-201ENST00000391001 104 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 SNORA12-201ENST00000391162 147 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 COTL1P1-201ENST00000422309 375 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 BTF3P11-201ENST00000426582 477 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 AC091179.3-201ENST00000474761 144 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 RNU6-313P-201ENST00000516317 112 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 HSPE1P18-201ENST00000517602 280 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 CYCSP23-201ENST00000519781 313 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 SCARNA15.3-201ENST00000626315 122 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 SCARNA4.1-201ENST00000628597 123 ntBASIC2.97□□□□□ -1.93
CLIP3Q96DZ5 Z82209.1-201ENST00000422141 2135 ntBASIC2.96□□□□□ -1.93
CLIP3Q96DZ5 AC092593.1-201ENST00000515413 1815 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 Y_RNA.179-201ENST00000363844 90 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 SNORA72.2-201ENST00000365028 127 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 MIR561-201ENST00000385216 97 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 MIR1294-201ENST00000408503 142 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 RNU2-54P-201ENST00000410299 190 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 SEPT7P4-201ENST00000437076 306 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 RNU7-26P-201ENST00000458980 63 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 RPS27AP9-201ENST00000477681 438 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 AC021205.2-201ENST00000480069 347 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 RNU6-426P-201ENST00000516464 97 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 SNORD116-25-201ENST00000516517 92 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 LARP7P3-201ENST00000579888 337 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 AL356575.1-201ENST00000603008 283 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 U4atac.1-201ENST00000618345 95 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 AC006386.2-201ENST00000624491 75 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 AC012005.1-201ENST00000624575 75 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 MIR622-201ENST00000638396 96 ntBASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
CLIP3Q96DZ5 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 Y_RNA.121-201ENST00000363309 113 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 RNU1-23P-201ENST00000363361 144 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 RNU6-546P-201ENST00000383991 107 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 RNU6-793P-201ENST00000384233 104 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 MIR569-201ENST00000385228 96 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 RNU6-257P-201ENST00000410238 98 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 AC009963.1-201ENST00000417265 157 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 AC005840.1-201ENST00000498412 377 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 RNA5SP272-201ENST00000516095 111 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 RNU6-155P-201ENST00000516347 100 ntBASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.95□□□□□ -1.94
CLIP3Q96DZ5 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 173.1 ms