Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 AC023790.1-201ENST00000482174 347 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 RNU6-559P-201ENST00000516151 98 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 Y_RNA.676-201ENST00000516393 96 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 CBX3P8-201ENST00000532412 525 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 AC090517.1-201ENST00000569307 266 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 MIR4498-201ENST00000577599 66 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
ZNF540Q8NDQ6 MIR302D-201ENST00000362275 68 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-874P-201ENST00000362390 105 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.48-201ENST00000362710 103 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-797P-201ENST00000363101 109 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.315-201ENST00000365117 102 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-1286P-201ENST00000383871 107 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.419-201ENST00000384041 102 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 SNORA29-201ENST00000384183 140 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-1065P-201ENST00000384513 106 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-331P-201ENST00000384724 107 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 MT-TD-201ENST00000387419 68 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 SNORA75.4-201ENST00000391278 119 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 AC108667.1-201ENST00000428618 249 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 ELOCP24-201ENST00000456370 334 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 U8.21-201ENST00000459536 136 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 SCARNA16.2-201ENST00000516520 172 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 RNU2-34P-201ENST00000516534 121 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 MIR5701-3-201ENST00000578890 82 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 MIR5701-1-201ENST00000585138 82 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 AL355802.3-201ENST00000607571 545 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 MIR5701-2-201ENST00000615634 82 ntBASIC1.46□□□□□ -2.18
ZNF540Q8NDQ6 RNU1-96P-201ENST00000364163 162 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.813-201ENST00000364639 102 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-890P-201ENST00000384121 107 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 U8.10-201ENST00000384260 133 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-378P-201ENST00000384324 107 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-1297P-201ENST00000384415 104 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-790P-201ENST00000384479 105 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 MIR559-201ENST00000385188 96 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 MIR300-201ENST00000401138 83 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.595-201ENST00000410403 105 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-955P-201ENST00000410497 104 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 MTND3P23-201ENST00000431980 347 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 AC027119.1-201ENST00000440877 241 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 snoU13.6-201ENST00000458785 104 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-1053P-201ENST00000515930 101 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.708-201ENST00000516950 96 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 RNU1-54P-201ENST00000517181 120 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 AC016256.1-201ENST00000547971 354 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 SNORD53B-201ENST00000577887 78 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 MIR3937-201ENST00000580135 106 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 AC009541.1-201ENST00000438279 2662 ntBASIC1.45□□□□□ -2.18
ZNF540Q8NDQ6 AP000648.3-201ENST00000623539 4507 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 MIR337-201ENST00000362281 93 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-595P-201ENST00000363944 107 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.259-201ENST00000364619 101 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 SNORD42.2-201ENST00000365570 69 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 MIR150-201ENST00000385048 84 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 SNORA75.6-201ENST00000391318 127 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 AC012306.1-201ENST00000423267 114 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 USMG5P1-201ENST00000425964 177 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 SDAD1P3-201ENST00000427380 333 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 SNORD13-201ENST00000459299 104 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 RPL30P7-201ENST00000479312 323 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 RPL30P10-201ENST00000488148 337 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 RPL23AP75-201ENST00000491601 451 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 DEFB131C-201ENST00000528817 165 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 AL133255.1-201ENST00000606374 441 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 snoU13.31-201ENST00000607291 104 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 AL512598.1-201ENST00000610158 273 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 SCARNA4-201ENST00000629045 128 ntBASIC1.44□□□□□ -2.18
ZNF540Q8NDQ6 MTND5P35-201ENST00000557537 1720 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 MIR26B-201ENST00000362251 77 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-1115P-201ENST00000362490 106 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-862P-201ENST00000362804 105 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 SNORA63D-201ENST00000364359 132 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 RNU6-933P-201ENST00000384424 107 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 Y_RNA.496-201ENST00000384444 101 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 MIR320A-201ENST00000385302 82 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 SNORA12.2-201ENST00000391040 156 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 MTCYBP4-201ENST00000401524 249 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 AC245047.4-201ENST00000433189 144 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 RN7SKP210-201ENST00000459176 261 ntBASIC1.43□□□□□ -2.18
ZNF540Q8NDQ6 AC010531.2-201ENST00000465012 153 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 119.1 ms