Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 RNU6-907P-201ENST00000390924 102 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 RNU6ATAC23P-201ENST00000408448 123 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 MIR1294-201ENST00000408503 142 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 RPL23AP36-201ENST00000413895 458 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 AC079804.2-201ENST00000490376 200 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 RNU5F-4P-201ENST00000516581 114 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 RNU6-586P-201ENST00000517265 104 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 RPL17P51-201ENST00000605218 238 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 AC022441.3-201ENST00000605737 136 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 AC068205.3-201ENST00000636385 468 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 MIR3674-201ENST00000636576 68 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.22□□□□□ -2.05
CLIP4Q8N3C7 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.21□□□□□ -2.05
CLIP4Q8N3C7 Y_RNA.54-201ENST00000362766 105 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 Y_RNA.101-201ENST00000363154 102 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 SNORD27-201ENST00000363981 72 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 Y_RNA.257-201ENST00000364596 102 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 RNA5SP125-201ENST00000364843 120 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 Y_RNA.416-201ENST00000384014 113 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 Y_RNA.478-201ENST00000384358 107 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 Y_RNA.552-201ENST00000384665 112 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 Y_RNA.569-201ENST00000384749 103 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 SNORA53-201ENST00000391141 249 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AL359511.1-201ENST00000402970 211 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AL603910.2-201ENST00000407268 136 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 MIR548H3-201ENST00000408771 118 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 RNA5SP504-201ENST00000410676 117 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AC003685.2-201ENST00000422795 395 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 SNORA59A-201ENST00000459326 152 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AC026436.1-201ENST00000510537 270 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 SERF1AP1-201ENST00000514575 187 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 RNA5SP148-201ENST00000516527 94 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 RNU6-1098P-201ENST00000516772 96 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AP002001.1-203ENST00000534002 267 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AC067747.1-201ENST00000608026 250 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 MIR6817-201ENST00000615588 66 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 AC091932.3-201ENST00000624223 323 ntBASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CLIP4Q8N3C7 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 Y_RNA.352-201ENST00000365439 102 ntBASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 SNORA67.2-201ENST00000384300 149 ntBASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 RNU6-1072P-201ENST00000384703 107 ntBASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 RNU6-443P-201ENST00000384780 107 ntBASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 AC005042.3-201ENST00000453230 174 ntBASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 RPL23AP3-201ENST00000453844 468 ntBASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 RNU6-966P-201ENST00000516479 104 ntBASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 RNU2-31P-201ENST00000516954 155 ntBASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 MIR5739-201ENST00000619803 80 ntBASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 AC127459.3-201ENST00000624328 466 ntBASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 IGHVIII-44-202ENST00000636235 289 ntBASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
CLIP4Q8N3C7 Y_RNA.20-201ENST00000362479 113 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 SNORA5B-201ENST00000363786 132 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 RNU6-1305P-201ENST00000364353 104 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 Y_RNA.277-201ENST00000364754 102 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 RNU6-326P-201ENST00000365480 107 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 RNU6-1264P-201ENST00000383891 107 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 Y_RNA.446-201ENST00000384178 104 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 RNU7-14P-201ENST00000459331 62 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 CKS1BP2-201ENST00000497342 240 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 RNU6-111P-201ENST00000517179 105 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 AL109918.3-201ENST00000603072 338 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 AC037487.3-201ENST00000606668 112 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 AL590240.4-201ENST00000616908 390 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 AC141273.2-201ENST00000618989 130 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 MIR203B-201ENST00000636080 86 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 AP000553.5-201ENST00000641933 54 ntBASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.19□□□□□ -2.06
CLIP4Q8N3C7 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.18□□□□□ -2.06
CLIP4Q8N3C7 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
CLIP4Q8N3C7 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CLIP4Q8N3C7 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
CLIP4Q8N3C7 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CLIP4Q8N3C7 MIR410-201ENST00000362222 80 ntBASIC2.18□□□□□ -2.06
CLIP4Q8N3C7 RNU6-545P-201ENST00000362681 104 ntBASIC2.18□□□□□ -2.06
CLIP4Q8N3C7 RNU6-1266P-201ENST00000362794 105 ntBASIC2.18□□□□□ -2.06
CLIP4Q8N3C7 Y_RNA.383-201ENST00000383855 97 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 129.5 ms