Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC010999.1-201ENST00000611856 324 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 MIR5701-2-201ENST00000615634 82 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.32□□□□□ -2.2
SKA3Q8IX90 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
SKA3Q8IX90 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
SKA3Q8IX90 U3.8-201ENST00000363675 217 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 RNU6-414P-201ENST00000363705 104 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 Y_RNA.166-201ENST00000363730 102 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 Y_RNA.179-201ENST00000363844 90 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 SNORA63D-201ENST00000364359 132 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 Y_RNA.287-201ENST00000364853 94 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 SNORA67.6-201ENST00000391093 99 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 RNU6-1001P-201ENST00000411265 100 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 EBAG9P1-201ENST00000418955 543 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 PDCL2P1-201ENST00000419302 352 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 SCARNA16.2-201ENST00000516520 172 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 AC105029.1-201ENST00000520250 669 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 AC093023.1-201ENST00000547375 507 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 AC015720.1-201ENST00000565251 277 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 PISRT1.1-201ENST00000616930 107 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 AL353997.5-201ENST00000618886 171 ntBASIC1.31□□□□□ -2.2
SKA3Q8IX90 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.31□□□□□ -2.2
SKA3Q8IX90 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
SKA3Q8IX90 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
SKA3Q8IX90 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.3□□□□□ -2.2
SKA3Q8IX90 RNU6-874P-201ENST00000362390 105 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 RNY1P16-201ENST00000363063 111 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 RNU6-457P-201ENST00000363999 107 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 Y_RNA.404-201ENST00000383978 102 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 MIR515-2-201ENST00000384883 83 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 MIR515-1-201ENST00000384884 83 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 RNU6-700P-201ENST00000391043 107 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 SNORA17.3-201ENST00000391159 129 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.3□□□□□ -2.2
SKA3Q8IX90 AC069257.2-201ENST00000441819 155 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 HSPE1P24-201ENST00000450782 238 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 AC112492.4-201ENST00000456549 352 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.3□□□□□ -2.2
SKA3Q8IX90 HMGN1P13-201ENST00000505795 138 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 Y_RNA.683-201ENST00000516508 93 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 Y_RNA.691-201ENST00000516611 103 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.3□□□□□ -2.2
SKA3Q8IX90 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.3□□□□□ -2.2
SKA3Q8IX90 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.3□□□□□ -2.2
SKA3Q8IX90 MIR4303-201ENST00000581299 66 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 MIR4524B-201ENST00000581569 115 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 AC125232.2-201ENST00000592457 143 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 MZT1P2-201ENST00000604387 248 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 MIR8074-201ENST00000615081 81 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 AC099654.5-201ENST00000636479 350 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 TPTEP1-208ENST00000636884 213 ntBASIC1.3□□□□□ -2.2
SKA3Q8IX90 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
SKA3Q8IX90 MTND5P16-201ENST00000460269 1703 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
SKA3Q8IX90 RNU6-1266P-201ENST00000362794 105 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 RNU4-13P-201ENST00000364019 141 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 RNA5SP99-201ENST00000364020 114 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 RNU6-1240P-201ENST00000365155 104 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 RNU6-338P-201ENST00000383888 105 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 RNU6-331P-201ENST00000384724 107 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 MIR320A-201ENST00000385302 82 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 RNA5SP323-201ENST00000391094 133 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 FGF7P8-201ENST00000402994 292 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 MIR1267-201ENST00000408723 78 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.29□□□□□ -2.2
SKA3Q8IX90 SDAD1P3-201ENST00000427380 333 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 AL354695.1-201ENST00000427935 228 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.29□□□□□ -2.2
SKA3Q8IX90 NDUFB4P10-201ENST00000452541 359 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 Y_RNA.635-201ENST00000459041 101 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 RNU7-87P-201ENST00000459343 62 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 RPL31P58-201ENST00000469001 379 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 RPL36AP21-201ENST00000490372 323 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 AC116353.2-201ENST00000505332 712 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 Y_RNA.675-201ENST00000516389 149 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 RNA5SP481-201ENST00000516814 122 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 RNU6-1213P-201ENST00000517075 94 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 SNORA31.24-201ENST00000517232 57 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 AP003033.1-201ENST00000527244 415 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 AC008269.2-201ENST00000561915 1105 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 AC004584.2-201ENST00000570407 410 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.29□□□□□ -2.2
SKA3Q8IX90 MTND5P35-201ENST00000557537 1720 ntBASIC1.29□□□□□ -2.2
SKA3Q8IX90 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.28□□□□□ -2.2
SKA3Q8IX90 AL161722.3-201ENST00000605789 2983 ntBASIC1.28□□□□□ -2.2
SKA3Q8IX90 RNA5SP467-201ENST00000391274 118 ntBASIC1.28□□□□□ -2.2
SKA3Q8IX90 SNORA75.4-201ENST00000391278 119 ntBASIC1.28□□□□□ -2.2
SKA3Q8IX90 MIR190B-201ENST00000401119 79 ntBASIC1.28□□□□□ -2.2
SKA3Q8IX90 MIR1185-2-201ENST00000408687 86 ntBASIC1.28□□□□□ -2.2
SKA3Q8IX90 RNU4-14P-201ENST00000410858 122 ntBASIC1.28□□□□□ -2.2
SKA3Q8IX90 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.28□□□□□ -2.2
SKA3Q8IX90 MTCYBP10-201ENST00000424905 650 ntBASIC1.28□□□□□ -2.2
SKA3Q8IX90 AC092423.1-201ENST00000430165 186 ntBASIC1.28□□□□□ -2.2
SKA3Q8IX90 RPL23AP50-201ENST00000434149 455 ntBASIC1.28□□□□□ -2.2
SKA3Q8IX90 RBMX2P4-201ENST00000441256 376 ntBASIC1.28□□□□□ -2.2
SKA3Q8IX90 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.28□□□□□ -2.2
SKA3Q8IX90 RNU6-307P-201ENST00000516743 106 ntBASIC1.28□□□□□ -2.2
SKA3Q8IX90 AL669831.3-213ENST00000636676 183 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 213.8 ms