Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RNA5SP48-201ENST00000363969 126 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 RNU6-384P-201ENST00000364900 104 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 RNU6-1240P-201ENST00000365155 104 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 SNORA2.2-201ENST00000365473 135 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 MIR562-201ENST00000384894 95 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 SNORD100-201ENST00000408573 76 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 ZNF885P-201ENST00000420174 1098 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 GXYLT1P1-201ENST00000446657 490 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 AC007327.1-201ENST00000447461 264 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 HSFY5P-201ENST00000453726 309 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC-0.45□□□□□ -2.48
USF3Q68DE3 AC010468.3-201ENST00000508225 458 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC-0.45□□□□□ -2.48
USF3Q68DE3 RNU7-41P-201ENST00000515917 61 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 RNU7-12P-201ENST00000516030 62 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC-0.45□□□□□ -2.48
USF3Q68DE3 RNY1P9-201ENST00000532431 109 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 MIR4778-201ENST00000577635 80 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 AC131159.1-201ENST00000621854 213 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC-0.45□□□□□ -2.48
USF3Q68DE3 snoZ40.1-201ENST00000364540 72 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 RNU6-396P-201ENST00000365369 105 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 U6.112-201ENST00000384129 70 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 RNU6-125P-201ENST00000384505 107 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 MIR578-201ENST00000384828 96 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 FGFR1OP2P1-201ENST00000395943 500 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 RNU4-30P-201ENST00000410245 143 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 AL512326.2-201ENST00000426359 151 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC-0.45□□□□□ -2.48
USF3Q68DE3 CALM2P4-201ENST00000430810 426 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 ZNF736P5Y-201ENST00000451173 805 ntBASIC-0.45□□□□□ -2.48
USF3Q68DE3 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC-0.45□□□□□ -2.48
USF3Q68DE3 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC-0.45□□□□□ -2.48
USF3Q68DE3 FER-210ENST00000628534 558 ntTSL 5 BASIC-0.45□□□□□ -2.48
USF3Q68DE3 RNU6-511P-201ENST00000363496 107 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 Y_RNA.311-201ENST00000365068 96 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 EEF1A1P40-201ENST00000412883 573 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-0.46□□□□□ -2.48
USF3Q68DE3 AC090960.1-201ENST00000421072 306 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 SEPT14P24-201ENST00000447236 180 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 AC009237.7-201ENST00000447357 229 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 AC013470.1-201ENST00000453438 462 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 AC091021.1-201ENST00000468051 388 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 AC079382.1-201ENST00000493346 557 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 RNU6-377P-201ENST00000515965 102 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 AC012467.1-201ENST00000607740 256 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 AC008250.2-201ENST00000615261 205 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 uc_338.36-201ENST00000622331 158 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 RNA5SP95-201ENST00000410319 137 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 MTCO2P8-201ENST00000412213 658 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 AC106883.1-201ENST00000418805 562 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC-0.46□□□□□ -2.48
USF3Q68DE3 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC-0.46□□□□□ -2.48
USF3Q68DE3 RNU6-1225P-201ENST00000516336 65 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC-0.46□□□□□ -2.48
USF3Q68DE3 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 AC098679.4-201ENST00000624241 654 ntBASIC-0.46□□□□□ -2.48
USF3Q68DE3 MIR377-201ENST00000362145 69 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 RNA5SP482-201ENST00000391269 118 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC-0.47□□□□□ -2.48
USF3Q68DE3 AL133396.1-201ENST00000432048 687 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 AC005002.2-201ENST00000438228 269 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 ZNF736P1Y-201ENST00000440402 1276 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 RNU7-57P-201ENST00000459540 60 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 AC016632.1-201ENST00000503994 196 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 RNU2-60P-201ENST00000517290 128 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC-0.47□□□□□ -2.48
USF3Q68DE3 AC104383.1-201ENST00000530297 370 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 AC011921.3-201ENST00000605540 361 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 AL121992.2-201ENST00000606262 256 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 AC063944.3-201ENST00000609969 533 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 MIR8084-201ENST00000614105 89 ntBASIC-0.47□□□□□ -2.48
USF3Q68DE3 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC-0.47□□□□□ -2.48
USF3Q68DE3 ANKRD20A17P-201ENST00000511745 1330 ntBASIC-0.47□□□□□ -2.49
USF3Q68DE3 RNU6-161P-201ENST00000363051 106 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 RNU6-25P-201ENST00000383873 107 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 RNU6-15P-201ENST00000384534 107 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 RNU6-29P-201ENST00000384637 107 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 RNU6-1179P-201ENST00000384667 107 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 MIR452-201ENST00000385020 85 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 SNORD75.1-201ENST00000408373 60 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC-0.48□□□□□ -2.49
USF3Q68DE3 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC-0.48□□□□□ -2.49
USF3Q68DE3 SNORD57-201ENST00000448188 72 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 AC026782.1-201ENST00000512952 449 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 RNU7-129P-201ENST00000516128 62 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 AC023050.3-201ENST00000541142 333 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 MIR4436A-201ENST00000585278 85 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 AC120024.3-201ENST00000603167 156 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 AL591926.4-201ENST00000616895 298 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 AL136221.1-201ENST00000621449 509 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 RNY3-201ENST00000365484 102 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 MIR454-201ENST00000390180 115 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 RNU6-127P-201ENST00000390897 107 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 RPS3AP3-201ENST00000411933 242 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC-0.48□□□□□ -2.49
USF3Q68DE3 SNORA74.3-201ENST00000517108 154 ntBASIC-0.48□□□□□ -2.49
USF3Q68DE3 RNU2-12P-201ENST00000517216 168 ntBASIC-0.48□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms