Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SF3A1Q15459 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
SF3A1Q15459 Y_RNA.64-201ENST00000362845 102 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 Y_RNA.446-201ENST00000384178 104 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 RNU6-301P-201ENST00000384277 107 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 RNU6-1109P-201ENST00000391187 107 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 MIR548F4-201ENST00000408515 105 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 RNU2-54P-201ENST00000410299 190 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 RPL23AP36-201ENST00000413895 458 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 AC016909.1-201ENST00000415916 166 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 LINC01399-202ENST00000458450 244 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.07□□□□□ -1.92
SF3A1Q15459 AC011406.1-201ENST00000512440 370 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 RNU6-1146P-201ENST00000516282 102 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.07□□□□□ -1.92
SF3A1Q15459 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.07□□□□□ -1.92
SF3A1Q15459 MIR3169-201ENST00000578032 83 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.07□□□□□ -1.92
SF3A1Q15459 MIR4635-201ENST00000583759 79 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 PRR13P7-201ENST00000605538 430 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 AC010297.1-201ENST00000623948 149 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC3.07□□□□□ -1.92
SF3A1Q15459 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SF3A1Q15459 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.07□□□□□ -1.92
SF3A1Q15459 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
SF3A1Q15459 ZNF271P-202ENST00000465539 1970 ntBASIC3.07□□□□□ -1.92
SF3A1Q15459 Y_RNA.26-201ENST00000362539 101 ntBASIC3.06□□□□□ -1.92
SF3A1Q15459 Y_RNA.149-201ENST00000363558 117 ntBASIC3.06□□□□□ -1.92
SF3A1Q15459 Y_RNA.176-201ENST00000363815 109 ntBASIC3.06□□□□□ -1.92
SF3A1Q15459 AC009963.1-201ENST00000417265 157 ntBASIC3.06□□□□□ -1.92
SF3A1Q15459 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.06□□□□□ -1.92
SF3A1Q15459 AC087499.2-201ENST00000432861 149 ntBASIC3.06□□□□□ -1.92
SF3A1Q15459 RPL23AP3-201ENST00000453844 468 ntBASIC3.06□□□□□ -1.92
SF3A1Q15459 RN7SL636P-201ENST00000497504 294 ntBASIC3.06□□□□□ -1.92
SF3A1Q15459 HMGB3P3-201ENST00000510526 400 ntBASIC3.06□□□□□ -1.92
SF3A1Q15459 AP003733.2-201ENST00000529409 171 ntBASIC3.06□□□□□ -1.92
SF3A1Q15459 MIR4529-201ENST00000578110 78 ntBASIC3.06□□□□□ -1.92
SF3A1Q15459 MIR3684-201ENST00000579779 74 ntBASIC3.06□□□□□ -1.92
SF3A1Q15459 AC022441.3-201ENST00000605737 136 ntBASIC3.06□□□□□ -1.92
SF3A1Q15459 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
SF3A1Q15459 RNU1-138P-201ENST00000384093 164 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 Y_RNA.512-201ENST00000384518 102 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 Y_RNA.574-201ENST00000384766 95 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 RNU6-1105P-201ENST00000384774 107 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 RNA5SP210-201ENST00000391034 120 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 snosnR66.1-201ENST00000391095 99 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 RNA5SP465-201ENST00000391195 109 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 RNU6-121P-201ENST00000410525 99 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 RNA5SP21-201ENST00000410917 96 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 AL358176.2-201ENST00000425769 204 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 YWHAEP4-201ENST00000505390 198 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 SNORA31.15-201ENST00000516771 132 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 RNU2-12P-201ENST00000517216 168 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 AC005034.5-201ENST00000604219 466 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 SNORD113-5-201ENST00000607261 78 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 U6.115-201ENST00000636045 103 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 IGHVIII-44-202ENST00000636235 289 ntBASIC3.05□□□□□ -1.92
SF3A1Q15459 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.05□□□□□ -1.92
SF3A1Q15459 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
SF3A1Q15459 MIR449A-201ENST00000362113 91 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 SNORD115-46-201ENST00000390982 71 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 RPL21P38-201ENST00000418090 167 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.04□□□□□ -1.92
SF3A1Q15459 HMGN2P3-201ENST00000433603 273 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 HMGN2P5-201ENST00000436882 273 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 AL353689.1-201ENST00000438895 199 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 SNORD65B-201ENST00000459126 73 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.04□□□□□ -1.92
SF3A1Q15459 SEPT14P8-201ENST00000508026 178 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 AC107222.1-201ENST00000510899 637 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 RNA5SP356-201ENST00000515972 94 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 RNU6-826P-201ENST00000516827 104 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 SNORA31.25-201ENST00000517242 134 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.04□□□□□ -1.92
SF3A1Q15459 GTF3AP2-201ENST00000557014 266 ntBASIC3.04□□□□□ -1.92
SF3A1Q15459 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
SF3A1Q15459 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
SF3A1Q15459 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
SF3A1Q15459 snoU2-30.2-201ENST00000362805 70 ntBASIC3.03□□□□□ -1.92
SF3A1Q15459 RNA5SP126-201ENST00000365092 109 ntBASIC3.03□□□□□ -1.92
SF3A1Q15459 RNU6-407P-201ENST00000365280 104 ntBASIC3.03□□□□□ -1.92
SF3A1Q15459 RNU6-417P-201ENST00000384712 107 ntBASIC3.03□□□□□ -1.92
SF3A1Q15459 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.03□□□□□ -1.92
SF3A1Q15459 AC098869.1-201ENST00000481627 292 ntBASIC3.03□□□□□ -1.92
SF3A1Q15459 AC025465.3-201ENST00000510570 311 ntBASIC3.03□□□□□ -1.92
SF3A1Q15459 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.03□□□□□ -1.92
SF3A1Q15459 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.03□□□□□ -1.92
SF3A1Q15459 AC008749.1-201ENST00000597650 306 ntBASIC3.03□□□□□ -1.92
SF3A1Q15459 AL049779.4-201ENST00000604500 156 ntBASIC3.03□□□□□ -1.92
SF3A1Q15459 AL162730.1-201ENST00000605734 292 ntBASIC3.03□□□□□ -1.92
SF3A1Q15459 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC3.03□□□□□ -1.92
SF3A1Q15459 SNORA20B-201ENST00000384220 132 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 MIR1283-2-201ENST00000408621 87 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.02□□□□□ -1.93
SF3A1Q15459 HMGB3P17-201ENST00000504195 649 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 AC010598.1-201ENST00000510378 103 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 RNU6-966P-201ENST00000516479 104 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 RNA5SP367-201ENST00000516557 118 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 RNU6-570P-201ENST00000517051 105 ntBASIC3.02□□□□□ -1.93
SF3A1Q15459 ELOCP29-201ENST00000588193 334 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms