Protein–RNA interactions for Protein: P49917

LIG4, DNA ligase 4, humanhuman

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4P49917 EIF1P2-201ENST00000428233 350 ntBASIC1.8□□□□□ -2.12
LIG4P49917 HSPE1P21-201ENST00000438283 308 ntBASIC1.8□□□□□ -2.12
LIG4P49917 SNORD13-201ENST00000459299 104 ntBASIC1.8□□□□□ -2.12
LIG4P49917 RNA5SP437-201ENST00000517249 129 ntBASIC1.8□□□□□ -2.12
LIG4P49917 AC004584.2-201ENST00000570407 410 ntBASIC1.8□□□□□ -2.12
LIG4P49917 AC090617.3-201ENST00000573670 475 ntBASIC1.8□□□□□ -2.12
LIG4P49917 AC092794.2-201ENST00000620933 563 ntBASIC1.8□□□□□ -2.12
LIG4P49917 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
LIG4P49917 SNORA33-201ENST00000363664 130 ntBASIC1.79□□□□□ -2.12
LIG4P49917 RNU6-1240P-201ENST00000365155 104 ntBASIC1.79□□□□□ -2.12
LIG4P49917 RNU2-7P-201ENST00000410794 178 ntBASIC1.79□□□□□ -2.12
LIG4P49917 RNU6-1001P-201ENST00000411265 100 ntBASIC1.79□□□□□ -2.12
LIG4P49917 EBAG9P1-201ENST00000418955 543 ntBASIC1.79□□□□□ -2.12
LIG4P49917 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.79□□□□□ -2.12
LIG4P49917 RPL31P63-201ENST00000422565 375 ntBASIC1.79□□□□□ -2.12
LIG4P49917 AC092423.1-201ENST00000430165 186 ntBASIC1.79□□□□□ -2.12
LIG4P49917 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.79□□□□□ -2.12
LIG4P49917 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.79□□□□□ -2.12
LIG4P49917 RPL17P19-201ENST00000489069 552 ntBASIC1.79□□□□□ -2.12
LIG4P49917 AC125232.2-201ENST00000592457 143 ntBASIC1.79□□□□□ -2.12
LIG4P49917 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.79□□□□□ -2.12
LIG4P49917 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.79□□□□□ -2.12
LIG4P49917 AC006026.1-201ENST00000444025 1803 ntBASIC1.79□□□□□ -2.12
LIG4P49917 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.79□□□□□ -2.12
LIG4P49917 RNU1-17P-201ENST00000363022 152 ntBASIC1.78□□□□□ -2.12
LIG4P49917 SNORA63D-201ENST00000364359 132 ntBASIC1.78□□□□□ -2.12
LIG4P49917 Y_RNA.474-201ENST00000384341 102 ntBASIC1.78□□□□□ -2.12
LIG4P49917 Y_RNA.557-201ENST00000384680 107 ntBASIC1.78□□□□□ -2.12
LIG4P49917 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.78□□□□□ -2.12
LIG4P49917 RN7SKP101-201ENST00000411376 320 ntBASIC1.78□□□□□ -2.12
LIG4P49917 HSPE1P9-201ENST00000440046 311 ntBASIC1.78□□□□□ -2.12
LIG4P49917 AC069257.2-201ENST00000441819 155 ntBASIC1.78□□□□□ -2.12
LIG4P49917 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.78□□□□□ -2.12
LIG4P49917 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.78□□□□□ -2.12
LIG4P49917 SNORA44.1-201ENST00000517031 108 ntBASIC1.78□□□□□ -2.12
LIG4P49917 CBX3P4-201ENST00000538909 354 ntBASIC1.78□□□□□ -2.12
LIG4P49917 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
LIG4P49917 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
LIG4P49917 RNU6-1188P-201ENST00000363795 107 ntBASIC1.77□□□□□ -2.13
LIG4P49917 SNORA72.2-201ENST00000365028 127 ntBASIC1.77□□□□□ -2.13
LIG4P49917 MIR515-2-201ENST00000384883 83 ntBASIC1.77□□□□□ -2.13
LIG4P49917 MIR515-1-201ENST00000384884 83 ntBASIC1.77□□□□□ -2.13
LIG4P49917 MIR30A-201ENST00000385092 71 ntBASIC1.77□□□□□ -2.13
LIG4P49917 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
LIG4P49917 Y_RNA.646-201ENST00000410980 101 ntBASIC1.77□□□□□ -2.13
LIG4P49917 MTND4P18-201ENST00000447010 465 ntBASIC1.77□□□□□ -2.13
LIG4P49917 AC112492.4-201ENST00000456549 352 ntBASIC1.77□□□□□ -2.13
LIG4P49917 HMGN1P13-201ENST00000505795 138 ntBASIC1.77□□□□□ -2.13
LIG4P49917 AC025465.3-201ENST00000510570 311 ntBASIC1.77□□□□□ -2.13
LIG4P49917 RNU6-107P-201ENST00000516643 102 ntBASIC1.77□□□□□ -2.13
LIG4P49917 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.77□□□□□ -2.13
LIG4P49917 AC091144.1-201ENST00000519573 138 ntBASIC1.77□□□□□ -2.13
LIG4P49917 APOOP3-201ENST00000536787 586 ntBASIC1.77□□□□□ -2.13
LIG4P49917 MIR3122-201ENST00000577243 73 ntBASIC1.77□□□□□ -2.13
LIG4P49917 AC005730.3-201ENST00000583067 366 ntBASIC1.77□□□□□ -2.13
LIG4P49917 MIR8074-201ENST00000615081 81 ntBASIC1.77□□□□□ -2.13
LIG4P49917 AL353997.5-201ENST00000618886 171 ntBASIC1.77□□□□□ -2.13
LIG4P49917 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
LIG4P49917 Y_RNA.142-201ENST00000363491 102 ntBASIC1.76□□□□□ -2.13
LIG4P49917 Y_RNA.358-201ENST00000365491 99 ntBASIC1.76□□□□□ -2.13
LIG4P49917 RNU6-310P-201ENST00000384655 107 ntBASIC1.76□□□□□ -2.13
LIG4P49917 MIR329-1-201ENST00000385028 80 ntBASIC1.76□□□□□ -2.13
LIG4P49917 RNA5SP467-201ENST00000391274 118 ntBASIC1.76□□□□□ -2.13
LIG4P49917 RNU6-1304P-201ENST00000411374 106 ntBASIC1.76□□□□□ -2.13
LIG4P49917 UBE2V1P7-201ENST00000446395 340 ntBASIC1.76□□□□□ -2.13
LIG4P49917 U8.22-201ENST00000459141 133 ntBASIC1.76□□□□□ -2.13
LIG4P49917 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.76□□□□□ -2.13
LIG4P49917 RPL36AP21-201ENST00000490372 323 ntBASIC1.76□□□□□ -2.13
LIG4P49917 AC008834.1-201ENST00000511612 175 ntBASIC1.76□□□□□ -2.13
LIG4P49917 MIR3198-2-201ENST00000577868 80 ntBASIC1.76□□□□□ -2.13
LIG4P49917 MIR5690-201ENST00000583739 73 ntBASIC1.76□□□□□ -2.13
LIG4P49917 AC113139.1-201ENST00000605049 239 ntBASIC1.76□□□□□ -2.13
LIG4P49917 MIR1244-1-201ENST00000612829 85 ntBASIC1.76□□□□□ -2.13
LIG4P49917 MIR1244-3-201ENST00000635744 85 ntBASIC1.76□□□□□ -2.13
LIG4P49917 MIR1244-2-201ENST00000636449 85 ntBASIC1.76□□□□□ -2.13
LIG4P49917 MIR1244-4-202ENST00000636813 85 ntBASIC1.76□□□□□ -2.13
LIG4P49917 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.75□□□□□ -2.13
LIG4P49917 MIR424-201ENST00000362227 98 ntBASIC1.75□□□□□ -2.13
LIG4P49917 RNA5SP361-201ENST00000362686 118 ntBASIC1.75□□□□□ -2.13
LIG4P49917 RNU6-1266P-201ENST00000362794 105 ntBASIC1.75□□□□□ -2.13
LIG4P49917 RNU6-414P-201ENST00000363705 104 ntBASIC1.75□□□□□ -2.13
LIG4P49917 RNA5SP99-201ENST00000364020 114 ntBASIC1.75□□□□□ -2.13
LIG4P49917 RNU6-879P-201ENST00000364328 108 ntBASIC1.75□□□□□ -2.13
LIG4P49917 RNU6-99P-201ENST00000364721 107 ntBASIC1.75□□□□□ -2.13
LIG4P49917 Y_RNA.595-201ENST00000410403 105 ntBASIC1.75□□□□□ -2.13
LIG4P49917 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.75□□□□□ -2.13
LIG4P49917 RNU6-120P-201ENST00000516077 103 ntBASIC1.75□□□□□ -2.13
LIG4P49917 RNU6-559P-201ENST00000516151 98 ntBASIC1.75□□□□□ -2.13
LIG4P49917 RNA5SP481-201ENST00000516814 122 ntBASIC1.75□□□□□ -2.13
LIG4P49917 AC022868.1-201ENST00000517767 391 ntBASIC1.75□□□□□ -2.13
LIG4P49917 UBE2V2P2-201ENST00000587677 504 ntBASIC1.75□□□□□ -2.13
LIG4P49917 RBM11P1-201ENST00000604951 799 ntBASIC1.75□□□□□ -2.13
LIG4P49917 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.75□□□□□ -2.13
LIG4P49917 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.75□□□□□ -2.13
LIG4P49917 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.75□□□□□ -2.13
LIG4P49917 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.75□□□□□ -2.13
LIG4P49917 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
LIG4P49917 SNORA72.1-201ENST00000363485 129 ntBASIC1.74□□□□□ -2.13
LIG4P49917 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.74□□□□□ -2.13
LIG4P49917 RNU6-360P-201ENST00000390944 104 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms