Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC091133.4-201ENST00000511142 308 ntBASIC0.86□□□□□ -2.27
BRCA1P38398 CPDP1-201ENST00000579660 283 ntBASIC0.86□□□□□ -2.27
BRCA1P38398 MIR5583-1-201ENST00000580941 59 ntBASIC0.86□□□□□ -2.27
BRCA1P38398 AC068790.6-201ENST00000602558 258 ntBASIC0.86□□□□□ -2.27
BRCA1P38398 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC0.85□□□□□ -2.27
BRCA1P38398 RNU6-1332P-201ENST00000516666 104 ntBASIC0.85□□□□□ -2.27
BRCA1P38398 Y_RNA.695-201ENST00000516715 107 ntBASIC0.85□□□□□ -2.27
BRCA1P38398 AC004812.1-201ENST00000540773 146 ntBASIC0.85□□□□□ -2.27
BRCA1P38398 AC026470.2-201ENST00000561492 181 ntBASIC0.85□□□□□ -2.27
BRCA1P38398 AC243829.6-201ENST00000612652 106 ntBASIC0.85□□□□□ -2.27
BRCA1P38398 AL359075.3-201ENST00000613288 217 ntBASIC0.85□□□□□ -2.27
BRCA1P38398 AL158209.2-201ENST00000619266 216 ntBASIC0.85□□□□□ -2.27
BRCA1P38398 AC090582.1-201ENST00000636321 199 ntBASIC0.85□□□□□ -2.27
BRCA1P38398 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.85□□□□□ -2.27
BRCA1P38398 HSBP1P2-201ENST00000299671 229 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 SNORD37.1-201ENST00000390968 65 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 RNA5SP511-201ENST00000410487 115 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.84□□□□□ -2.27
BRCA1P38398 AL359672.1-201ENST00000442302 409 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 AL606517.2-201ENST00000442855 241 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 SNORD65B-201ENST00000459126 73 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
BRCA1P38398 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC0.84□□□□□ -2.27
BRCA1P38398 MIR3664-201ENST00000579074 99 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 AC022432.1-201ENST00000595739 310 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.84□□□□□ -2.27
BRCA1P38398 AC146944.4-201ENST00000602697 718 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 AL929325.1-201ENST00000603096 117 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 AC092747.3-201ENST00000603769 301 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 AC063944.3-201ENST00000609969 533 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 AC109347.2-201ENST00000610220 349 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.84□□□□□ -2.27
BRCA1P38398 RNA5SP347-201ENST00000362445 119 ntBASIC0.84□□□□□ -2.28
BRCA1P38398 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.84□□□□□ -2.28
BRCA1P38398 RNU6-1042P-201ENST00000384204 107 ntBASIC0.84□□□□□ -2.28
BRCA1P38398 SNORD116-8-201ENST00000384365 95 ntBASIC0.84□□□□□ -2.28
BRCA1P38398 MIR653-201ENST00000385279 96 ntBASIC0.84□□□□□ -2.28
BRCA1P38398 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.84□□□□□ -2.28
BRCA1P38398 RNU6-440P-201ENST00000390882 105 ntBASIC0.84□□□□□ -2.28
BRCA1P38398 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.84□□□□□ -2.28
BRCA1P38398 AL358934.1-201ENST00000432346 324 ntBASIC0.84□□□□□ -2.28
BRCA1P38398 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC0.84□□□□□ -2.28
BRCA1P38398 SRRM1P2-201ENST00000464531 1192 ntBASIC0.84□□□□□ -2.28
BRCA1P38398 RPL39P38-201ENST00000467018 153 ntBASIC0.84□□□□□ -2.28
BRCA1P38398 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.84□□□□□ -2.28
BRCA1P38398 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.84□□□□□ -2.28
BRCA1P38398 RNU6-496P-201ENST00000516145 99 ntBASIC0.84□□□□□ -2.28
BRCA1P38398 RNU6-229P-201ENST00000516614 102 ntBASIC0.84□□□□□ -2.28
BRCA1P38398 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC0.84□□□□□ -2.28
BRCA1P38398 MDM2-233ENST00000545204 398 ntTSL 5 BASIC0.84□□□□□ -2.28
BRCA1P38398 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.84□□□□□ -2.28
BRCA1P38398 AC243829.3-201ENST00000622177 108 ntBASIC0.84□□□□□ -2.28
BRCA1P38398 RNU6-1305P-201ENST00000364353 104 ntBASIC0.83□□□□□ -2.28
BRCA1P38398 RNU6-325P-201ENST00000411132 105 ntBASIC0.83□□□□□ -2.28
BRCA1P38398 AL663109.1-201ENST00000411498 844 ntBASIC0.83□□□□□ -2.28
BRCA1P38398 AC004866.1-201ENST00000411748 78 ntBASIC0.83□□□□□ -2.28
BRCA1P38398 RAB28P5-201ENST00000427490 651 ntBASIC0.83□□□□□ -2.28
BRCA1P38398 AC004386.2-201ENST00000441858 148 ntBASIC0.83□□□□□ -2.28
BRCA1P38398 C1DP4-201ENST00000455429 424 ntBASIC0.83□□□□□ -2.28
BRCA1P38398 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.83□□□□□ -2.28
BRCA1P38398 RNU7-180P-201ENST00000459240 63 ntBASIC0.83□□□□□ -2.28
BRCA1P38398 AC117454.1-201ENST00000491120 168 ntBASIC0.83□□□□□ -2.28
BRCA1P38398 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
BRCA1P38398 SNORA59B-202ENST00000578183 701 ntBASIC0.83□□□□□ -2.28
BRCA1P38398 AL162413.1-201ENST00000603198 110 ntBASIC0.83□□□□□ -2.28
BRCA1P38398 AC012676.2-201ENST00000619258 186 ntBASIC0.83□□□□□ -2.28
BRCA1P38398 MIR608-201ENST00000384820 100 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 RNU6-332P-201ENST00000391193 108 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 MIR450B-201ENST00000401182 78 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 RNU6-57P-201ENST00000411348 103 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 AC245047.7-201ENST00000440265 293 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 RPS20P10-201ENST00000451209 253 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC0.82□□□□□ -2.28
BRCA1P38398 RNU6-351P-201ENST00000516097 100 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 RNU6-165P-201ENST00000517170 99 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 AC091178.2-201ENST00000584401 117 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 AL022345.2-201ENST00000606307 135 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 AC009248.2-201ENST00000619826 254 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC0.82□□□□□ -2.28
BRCA1P38398 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
BRCA1P38398 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.82□□□□□ -2.28
BRCA1P38398 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.82□□□□□ -2.28
BRCA1P38398 RNU6-910P-201ENST00000390844 107 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 EIF4E2P1-201ENST00000393781 255 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 MIR891A-201ENST00000401237 79 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.82□□□□□ -2.28
BRCA1P38398 RNU7-187P-201ENST00000458985 68 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 RNU6-1208P-201ENST00000459588 107 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 AC103851.1-201ENST00000506833 274 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 RN7SKP298-201ENST00000515950 94 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 RNA5SP395-201ENST00000516567 118 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 APOOP3-201ENST00000536787 586 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 TPRKBP2-201ENST00000565969 475 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 AC092807.2-201ENST00000609367 243 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 AC139792.3-201ENST00000623525 224 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 AC099654.12-201ENST00000639868 649 ntBASIC0.82□□□□□ -2.28
BRCA1P38398 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
BRCA1P38398 MIR562-201ENST00000384894 95 ntBASIC0.81□□□□□ -2.28
BRCA1P38398 MRPL35P1-201ENST00000404272 572 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms