Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 HMGN2P23-201ENST00000456759 269 ntBASIC1.85□□□□□ -2.11
HOXD13P35453 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.85□□□□□ -2.11
HOXD13P35453 SCARNA16.2-201ENST00000516520 172 ntBASIC1.85□□□□□ -2.11
HOXD13P35453 RNU1-142P-201ENST00000516682 145 ntBASIC1.85□□□□□ -2.11
HOXD13P35453 CBX3P4-201ENST00000538909 354 ntBASIC1.85□□□□□ -2.11
HOXD13P35453 HSBP1P1-201ENST00000555205 166 ntBASIC1.85□□□□□ -2.11
HOXD13P35453 AC016727.1-205ENST00000605437 569 ntBASIC1.85□□□□□ -2.11
HOXD13P35453 AL359075.3-201ENST00000613288 217 ntBASIC1.85□□□□□ -2.11
HOXD13P35453 CENPF-206ENST00000614578 528 ntTSL 5 BASIC1.85□□□□□ -2.11
HOXD13P35453 AC133104.2-201ENST00000615272 193 ntBASIC1.85□□□□□ -2.11
HOXD13P35453 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.85□□□□□ -2.11
HOXD13P35453 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
HOXD13P35453 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.84□□□□□ -2.11
HOXD13P35453 MIR1267-201ENST00000408723 78 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 RNU6-370P-201ENST00000411008 104 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.84□□□□□ -2.11
HOXD13P35453 MTND4P18-201ENST00000447010 465 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 snoU13.9-201ENST00000458927 103 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 HMGN1P12-201ENST00000499125 195 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
HOXD13P35453 MIR2355-201ENST00000517199 87 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 AL137100.2-201ENST00000555786 315 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 MIR3122-201ENST00000577243 73 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 AC024614.2-201ENST00000577584 372 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 MIR3684-201ENST00000579779 74 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 MIR3618-201ENST00000580330 88 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 AC022432.1-201ENST00000595739 310 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 AL355073.2-201ENST00000612106 557 ntBASIC1.84□□□□□ -2.11
HOXD13P35453 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
HOXD13P35453 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.84□□□□□ -2.12
HOXD13P35453 RNU6-879P-201ENST00000364328 108 ntBASIC1.83□□□□□ -2.12
HOXD13P35453 Y_RNA.557-201ENST00000384680 107 ntBASIC1.83□□□□□ -2.12
HOXD13P35453 MIR504-201ENST00000385065 83 ntBASIC1.83□□□□□ -2.12
HOXD13P35453 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
HOXD13P35453 AC016909.1-201ENST00000415916 166 ntBASIC1.83□□□□□ -2.12
HOXD13P35453 COX6CP10-201ENST00000416832 224 ntBASIC1.83□□□□□ -2.12
HOXD13P35453 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.83□□□□□ -2.12
HOXD13P35453 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.83□□□□□ -2.12
HOXD13P35453 RBM11P1-201ENST00000604951 799 ntBASIC1.83□□□□□ -2.12
HOXD13P35453 AC113139.1-201ENST00000605049 239 ntBASIC1.83□□□□□ -2.12
HOXD13P35453 Y_RNA.287-201ENST00000364853 94 ntBASIC1.82□□□□□ -2.12
HOXD13P35453 RNU6-439P-201ENST00000384188 106 ntBASIC1.82□□□□□ -2.12
HOXD13P35453 RNU6-950P-201ENST00000384651 107 ntBASIC1.82□□□□□ -2.12
HOXD13P35453 MIR625-201ENST00000385047 85 ntBASIC1.82□□□□□ -2.12
HOXD13P35453 JTBP1-201ENST00000441314 247 ntBASIC1.82□□□□□ -2.12
HOXD13P35453 UQCRBP2-201ENST00000447827 297 ntBASIC1.82□□□□□ -2.12
HOXD13P35453 MTND4P17-201ENST00000470444 350 ntBASIC1.82□□□□□ -2.12
HOXD13P35453 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.82□□□□□ -2.12
HOXD13P35453 AC074133.1-201ENST00000515696 183 ntBASIC1.82□□□□□ -2.12
HOXD13P35453 RNA5SP437-201ENST00000517249 129 ntBASIC1.82□□□□□ -2.12
HOXD13P35453 AC022868.1-201ENST00000517767 391 ntBASIC1.82□□□□□ -2.12
HOXD13P35453 MIR3683-201ENST00000580847 82 ntBASIC1.82□□□□□ -2.12
HOXD13P35453 AC104260.1-201ENST00000616660 539 ntBASIC1.82□□□□□ -2.12
HOXD13P35453 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.81□□□□□ -2.12
HOXD13P35453 MIR424-201ENST00000362227 98 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 Y_RNA.142-201ENST00000363491 102 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 Y_RNA.358-201ENST00000365491 99 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 MIR764-201ENST00000390811 85 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 RNA5SP213-201ENST00000391031 106 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 RNU6-1001P-201ENST00000411265 100 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.81□□□□□ -2.12
HOXD13P35453 RPL31P63-201ENST00000422565 375 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 HSPE1P21-201ENST00000438283 308 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 AC073910.1-201ENST00000445047 438 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 snoU13.27-201ENST00000459278 104 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 MIR2053-201ENST00000459295 91 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 RPL26P26-201ENST00000480251 434 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.81□□□□□ -2.12
HOXD13P35453 AK6P2-201ENST00000549020 471 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.81□□□□□ -2.12
HOXD13P35453 UBE2V2P2-201ENST00000587677 504 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 AC006435.5-201ENST00000624486 112 ntBASIC1.81□□□□□ -2.12
HOXD13P35453 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
HOXD13P35453 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
HOXD13P35453 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
HOXD13P35453 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
HOXD13P35453 MIR329-1-201ENST00000385028 80 ntBASIC1.8□□□□□ -2.12
HOXD13P35453 RNU11-5P-201ENST00000391216 129 ntBASIC1.8□□□□□ -2.12
HOXD13P35453 RNA5SP467-201ENST00000391274 118 ntBASIC1.8□□□□□ -2.12
HOXD13P35453 SNORA75.6-201ENST00000391318 127 ntBASIC1.8□□□□□ -2.12
HOXD13P35453 AC114482.1-201ENST00000418010 247 ntBASIC1.8□□□□□ -2.12
HOXD13P35453 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.8□□□□□ -2.12
HOXD13P35453 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.8□□□□□ -2.12
HOXD13P35453 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.8□□□□□ -2.12
HOXD13P35453 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.8□□□□□ -2.12
HOXD13P35453 RNU6-1188P-201ENST00000363795 107 ntBASIC1.79□□□□□ -2.12
HOXD13P35453 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.79□□□□□ -2.12
HOXD13P35453 RNU6-1264P-201ENST00000383891 107 ntBASIC1.79□□□□□ -2.12
HOXD13P35453 Y_RNA.384-201ENST00000383909 102 ntBASIC1.79□□□□□ -2.12
HOXD13P35453 RNU6-1145P-201ENST00000384246 107 ntBASIC1.79□□□□□ -2.12
HOXD13P35453 RNU6-1297P-201ENST00000384415 104 ntBASIC1.79□□□□□ -2.12
HOXD13P35453 Y_RNA.498-201ENST00000384460 102 ntBASIC1.79□□□□□ -2.12
HOXD13P35453 Y_RNA.577-201ENST00000384794 101 ntBASIC1.79□□□□□ -2.12
HOXD13P35453 MTCYBP4-201ENST00000401524 249 ntBASIC1.79□□□□□ -2.12
HOXD13P35453 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.79□□□□□ -2.12
HOXD13P35453 PCNPP5-201ENST00000452246 481 ntBASIC1.79□□□□□ -2.12
HOXD13P35453 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.79□□□□□ -2.12
HOXD13P35453 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.79□□□□□ -2.12
HOXD13P35453 RNU6-559P-201ENST00000516151 98 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms