Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CST2P1-201ENST00000425770 87 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 AL445305.1-201ENST00000432577 575 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 HMGN2P9-201ENST00000476875 229 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 RNA5SP384-201ENST00000516615 116 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 AC134698.4-201ENST00000523451 826 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.54□□□□□ -2.16
PTPN4P29074 DNAJC19P9-201ENST00000555084 351 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 MIR4781-201ENST00000585250 76 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 RBM11P1-201ENST00000604951 799 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 AC008873.1-201ENST00000625051 138 ntBASIC1.54□□□□□ -2.16
PTPN4P29074 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.54□□□□□ -2.16
PTPN4P29074 AP000648.3-201ENST00000623539 4507 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 RNU6-975P-201ENST00000384296 105 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 RNU6-541P-201ENST00000384709 110 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 RNU6-360P-201ENST00000390944 104 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 MIR1267-201ENST00000408723 78 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 RNA5SP504-201ENST00000410676 117 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 USMG5P1-201ENST00000425964 177 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 AP000870.1-201ENST00000472927 406 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 SNORA25.14-201ENST00000516481 132 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 UBL5P4-201ENST00000562584 236 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.53□□□□□ -2.16
PTPN4P29074 MIR4801-201ENST00000582704 82 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 AL355802.3-201ENST00000607571 545 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.53□□□□□ -2.16
PTPN4P29074 AC010615.1-201ENST00000594254 1764 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 MIR337-201ENST00000362281 93 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 RNU1-96P-201ENST00000364163 162 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 Y_RNA.303-201ENST00000364998 94 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.52□□□□□ -2.17
PTPN4P29074 Y_RNA.474-201ENST00000384341 102 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 RNU6-331P-201ENST00000384724 107 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 SNORA75.4-201ENST00000391278 119 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 RNU2-7P-201ENST00000410794 178 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 RNU6-321P-201ENST00000410912 106 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 AC008134.1-201ENST00000420943 193 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 MTND3P23-201ENST00000431980 347 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 Y_RNA.635-201ENST00000459041 101 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 AC023790.1-201ENST00000482174 347 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 AC010409.1-201ENST00000487382 476 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 Y_RNA.706-201ENST00000516933 99 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 AC105029.1-201ENST00000520250 669 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 AL359821.1-201ENST00000605519 182 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 AC100812.1-201ENST00000607622 580 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 SNORD11B-201ENST00000607707 90 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 MIR7974-201ENST00000615835 79 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 PISRT1.1-201ENST00000616930 107 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 AL078596.1-201ENST00000624856 447 ntBASIC1.52□□□□□ -2.17
PTPN4P29074 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.52□□□□□ -2.17
PTPN4P29074 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
PTPN4P29074 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
PTPN4P29074 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
PTPN4P29074 RNU1-62P-201ENST00000362599 164 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 RNY1P16-201ENST00000363063 111 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 SNORA72.1-201ENST00000363485 129 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 RNU1-42P-201ENST00000364033 160 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 RNU6-280P-201ENST00000364145 104 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 RNU6-1305P-201ENST00000364353 104 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 MIR10B-201ENST00000385011 110 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.51□□□□□ -2.17
PTPN4P29074 AC007098.1-201ENST00000420122 367 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.51□□□□□ -2.17
PTPN4P29074 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.51□□□□□ -2.17
PTPN4P29074 AC092473.1-201ENST00000441098 221 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 AC016717.1-201ENST00000448918 286 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 RNU7-95P-201ENST00000459222 64 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 AC011406.1-201ENST00000512440 370 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 SCARNA16.2-201ENST00000516520 172 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 RNU1-117P-201ENST00000517041 158 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 RNU6-1213P-201ENST00000517075 94 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.51□□□□□ -2.17
PTPN4P29074 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.51□□□□□ -2.17
PTPN4P29074 AC005730.3-201ENST00000583067 366 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.51□□□□□ -2.17
PTPN4P29074 AL669831.3-213ENST00000636676 183 ntBASIC1.51□□□□□ -2.17
PTPN4P29074 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.51□□□□□ -2.17
PTPN4P29074 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
PTPN4P29074 RNU6-222P-201ENST00000362438 107 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 Y_RNA.106-201ENST00000363189 100 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 RNU6-60P-201ENST00000364792 103 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 RNU1-78P-201ENST00000391248 165 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 RNU1-139P-201ENST00000391307 165 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
PTPN4P29074 RNU6-370P-201ENST00000411008 104 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 AC060773.1-201ENST00000421698 310 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 AL353997.1-201ENST00000432936 108 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 NDUFB4P10-201ENST00000452541 359 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 AC091179.3-201ENST00000474761 144 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 TRMT112P2-201ENST00000512910 132 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 RNU6-1114P-201ENST00000516022 107 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
PTPN4P29074 AC005899.2-201ENST00000584353 90 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 UBE2V2P2-201ENST00000587677 504 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 AC068205.3-201ENST00000636385 468 ntBASIC1.5□□□□□ -2.17
PTPN4P29074 RNU6-874P-201ENST00000362390 105 ntBASIC1.49□□□□□ -2.17
PTPN4P29074 SNORD33-201ENST00000362761 85 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 168.2 ms