Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC008134.1-201ENST00000420943 193 ntBASIC1.39□□□□□ -2.19
SDC1P18827 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.39□□□□□ -2.19
SDC1P18827 AL354695.1-201ENST00000427935 228 ntBASIC1.39□□□□□ -2.19
SDC1P18827 NDUFB4P10-201ENST00000452541 359 ntBASIC1.39□□□□□ -2.19
SDC1P18827 SNORD13-201ENST00000459299 104 ntBASIC1.39□□□□□ -2.19
SDC1P18827 SCARNA16.2-201ENST00000516520 172 ntBASIC1.39□□□□□ -2.19
SDC1P18827 AC093023.1-201ENST00000547375 507 ntBASIC1.39□□□□□ -2.19
SDC1P18827 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.39□□□□□ -2.19
SDC1P18827 AC016925.2-201ENST00000605108 242 ntBASIC1.39□□□□□ -2.19
SDC1P18827 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.39□□□□□ -2.19
SDC1P18827 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.39□□□□□ -2.19
SDC1P18827 TPTEP1-208ENST00000636884 213 ntBASIC1.39□□□□□ -2.19
SDC1P18827 MTND5P35-201ENST00000557537 1720 ntBASIC1.38□□□□□ -2.19
SDC1P18827 RNU6-1283P-201ENST00000365314 105 ntBASIC1.38□□□□□ -2.19
SDC1P18827 Y_RNA.390-201ENST00000383932 102 ntBASIC1.38□□□□□ -2.19
SDC1P18827 RNU6-700P-201ENST00000391043 107 ntBASIC1.38□□□□□ -2.19
SDC1P18827 RNA5SP467-201ENST00000391274 118 ntBASIC1.38□□□□□ -2.19
SDC1P18827 MIR1253-201ENST00000408273 105 ntBASIC1.38□□□□□ -2.19
SDC1P18827 RNU2-7P-201ENST00000410794 178 ntBASIC1.38□□□□□ -2.19
SDC1P18827 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.38□□□□□ -2.19
SDC1P18827 EIF1P2-201ENST00000428233 350 ntBASIC1.38□□□□□ -2.19
SDC1P18827 RPL31P58-201ENST00000469001 379 ntBASIC1.38□□□□□ -2.19
SDC1P18827 AC025465.3-201ENST00000510570 311 ntBASIC1.38□□□□□ -2.19
SDC1P18827 RNU6-1146P-201ENST00000516282 102 ntBASIC1.38□□□□□ -2.19
SDC1P18827 RNA5SP61-201ENST00000516453 100 ntBASIC1.38□□□□□ -2.19
SDC1P18827 SNORA44.1-201ENST00000517031 108 ntBASIC1.38□□□□□ -2.19
SDC1P18827 AC091144.1-201ENST00000519573 138 ntBASIC1.38□□□□□ -2.19
SDC1P18827 AL121579.1-201ENST00000555129 305 ntBASIC1.38□□□□□ -2.19
SDC1P18827 SNORD53B-201ENST00000577887 78 ntBASIC1.38□□□□□ -2.19
SDC1P18827 MIR8074-201ENST00000615081 81 ntBASIC1.38□□□□□ -2.19
SDC1P18827 PISRT1.1-201ENST00000616930 107 ntBASIC1.38□□□□□ -2.19
SDC1P18827 AL359757.2-201ENST00000624309 274 ntBASIC1.38□□□□□ -2.19
SDC1P18827 AC099654.5-201ENST00000636479 350 ntBASIC1.38□□□□□ -2.19
SDC1P18827 AL669831.3-213ENST00000636676 183 ntBASIC1.38□□□□□ -2.19
SDC1P18827 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.38□□□□□ -2.19
SDC1P18827 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.37□□□□□ -2.19
SDC1P18827 RNU6-1240P-201ENST00000365155 104 ntBASIC1.37□□□□□ -2.19
SDC1P18827 Y_RNA.364-201ENST00000365532 101 ntBASIC1.37□□□□□ -2.19
SDC1P18827 RNU6-338P-201ENST00000383888 105 ntBASIC1.37□□□□□ -2.19
SDC1P18827 SNORA67.6-201ENST00000391093 99 ntBASIC1.37□□□□□ -2.19
SDC1P18827 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.37□□□□□ -2.19
SDC1P18827 MTCYBP10-201ENST00000424905 650 ntBASIC1.37□□□□□ -2.19
SDC1P18827 AL121890.1-201ENST00000435457 205 ntBASIC1.37□□□□□ -2.19
SDC1P18827 U8.22-201ENST00000459141 133 ntBASIC1.37□□□□□ -2.19
SDC1P18827 RPL26P26-201ENST00000480251 434 ntBASIC1.37□□□□□ -2.19
SDC1P18827 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.37□□□□□ -2.19
SDC1P18827 Y_RNA.683-201ENST00000516508 93 ntBASIC1.37□□□□□ -2.19
SDC1P18827 SNORA20.3-201ENST00000516880 132 ntBASIC1.37□□□□□ -2.19
SDC1P18827 SNORA31.24-201ENST00000517232 57 ntBASIC1.37□□□□□ -2.19
SDC1P18827 AC015720.1-201ENST00000565251 277 ntBASIC1.37□□□□□ -2.19
SDC1P18827 FRG2DP-202ENST00000566967 323 ntBASIC1.37□□□□□ -2.19
SDC1P18827 AC016727.1-205ENST00000605437 569 ntBASIC1.37□□□□□ -2.19
SDC1P18827 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.37□□□□□ -2.19
SDC1P18827 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.37□□□□□ -2.19
SDC1P18827 RNU6-414P-201ENST00000363705 104 ntBASIC1.36□□□□□ -2.19
SDC1P18827 RNU1-42P-201ENST00000364033 160 ntBASIC1.36□□□□□ -2.19
SDC1P18827 RNU6-60P-201ENST00000364792 103 ntBASIC1.36□□□□□ -2.19
SDC1P18827 SNORA72.2-201ENST00000365028 127 ntBASIC1.36□□□□□ -2.19
SDC1P18827 SNORA4.2-201ENST00000365313 147 ntBASIC1.36□□□□□ -2.19
SDC1P18827 MIR515-2-201ENST00000384883 83 ntBASIC1.36□□□□□ -2.19
SDC1P18827 MIR515-1-201ENST00000384884 83 ntBASIC1.36□□□□□ -2.19
SDC1P18827 EBAG9P1-201ENST00000418955 543 ntBASIC1.36□□□□□ -2.19
SDC1P18827 AC069257.2-201ENST00000441819 155 ntBASIC1.36□□□□□ -2.19
SDC1P18827 AC073910.1-201ENST00000445047 438 ntBASIC1.36□□□□□ -2.19
SDC1P18827 MTND4P18-201ENST00000447010 465 ntBASIC1.36□□□□□ -2.19
SDC1P18827 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.36□□□□□ -2.19
SDC1P18827 AC112492.4-201ENST00000456549 352 ntBASIC1.36□□□□□ -2.19
SDC1P18827 RNU7-87P-201ENST00000459343 62 ntBASIC1.36□□□□□ -2.19
SDC1P18827 HMGN1P12-201ENST00000499125 195 ntBASIC1.36□□□□□ -2.19
SDC1P18827 HMGN1P13-201ENST00000505795 138 ntBASIC1.36□□□□□ -2.19
SDC1P18827 AC090617.3-201ENST00000573670 475 ntBASIC1.36□□□□□ -2.19
SDC1P18827 SNORA77B-201ENST00000578179 125 ntBASIC1.36□□□□□ -2.19
SDC1P18827 AL645939.4-201ENST00000604495 135 ntBASIC1.36□□□□□ -2.19
SDC1P18827 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.36□□□□□ -2.19
SDC1P18827 U6.108-201ENST00000637764 58 ntBASIC1.36□□□□□ -2.19
SDC1P18827 AC099654.14-201ENST00000638599 341 ntBASIC1.36□□□□□ -2.19
SDC1P18827 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
SDC1P18827 RNA5SP361-201ENST00000362686 118 ntBASIC1.35□□□□□ -2.19
SDC1P18827 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.35□□□□□ -2.19
SDC1P18827 Y_RNA.557-201ENST00000384680 107 ntBASIC1.35□□□□□ -2.19
SDC1P18827 MIR329-1-201ENST00000385028 80 ntBASIC1.35□□□□□ -2.19
SDC1P18827 RNU6-360P-201ENST00000390944 104 ntBASIC1.35□□□□□ -2.19
SDC1P18827 RN7SKP51-201ENST00000410781 304 ntBASIC1.35□□□□□ -2.19
SDC1P18827 RNU6-370P-201ENST00000411008 104 ntBASIC1.35□□□□□ -2.19
SDC1P18827 AC138393.2-201ENST00000414742 246 ntBASIC1.35□□□□□ -2.19
SDC1P18827 AC092423.1-201ENST00000430165 186 ntBASIC1.35□□□□□ -2.19
SDC1P18827 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.35□□□□□ -2.19
SDC1P18827 Y_RNA.635-201ENST00000459041 101 ntBASIC1.35□□□□□ -2.19
SDC1P18827 RPL36AP21-201ENST00000490372 323 ntBASIC1.35□□□□□ -2.19
SDC1P18827 RNA5SP481-201ENST00000516814 122 ntBASIC1.35□□□□□ -2.19
SDC1P18827 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.35□□□□□ -2.19
SDC1P18827 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
SDC1P18827 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.35□□□□□ -2.19
SDC1P18827 AC004584.2-201ENST00000570407 410 ntBASIC1.35□□□□□ -2.19
SDC1P18827 AC005899.2-201ENST00000584353 90 ntBASIC1.35□□□□□ -2.19
SDC1P18827 AL357075.2-201ENST00000614906 189 ntBASIC1.35□□□□□ -2.19
SDC1P18827 AC092794.2-201ENST00000620933 563 ntBASIC1.35□□□□□ -2.19
SDC1P18827 AC095038.3-201ENST00000634439 195 ntBASIC1.35□□□□□ -2.19
SDC1P18827 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.19
SDC1P18827 U8.1-201ENST00000362843 134 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms