Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RNA5SP293-201ENST00000410527 113 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 RN7SKP51-201ENST00000410781 304 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 ELOCP21-201ENST00000412558 336 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 Z98742.2-201ENST00000431564 187 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 AC009237.7-201ENST00000447357 229 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 RN7SL20P-201ENST00000488827 297 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 SCARNA3-201ENST00000517097 143 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 AC104027.1-201ENST00000521887 300 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 MRPS18CP4-201ENST00000535821 231 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.2□□□□□ -1.9
COL6A1P12109 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.2□□□□□ -1.9
COL6A1P12109 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.2□□□□□ -1.9
COL6A1P12109 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
COL6A1P12109 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.2□□□□□ -1.9
COL6A1P12109 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.2□□□□□ -1.9
COL6A1P12109 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.2□□□□□ -1.9
COL6A1P12109 RNU6-1010P-201ENST00000362757 107 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 SNORD114-19-201ENST00000363072 75 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 RNU6-727P-201ENST00000363592 107 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 RNA5SP240-201ENST00000365355 128 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 MIR549A-201ENST00000385268 96 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.19□□□□□ -1.9
COL6A1P12109 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.19□□□□□ -1.9
COL6A1P12109 RNU7-26P-201ENST00000458980 63 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 snoU13.15-201ENST00000459407 104 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 RNU1-143P-201ENST00000516296 146 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 RNY3P16-201ENST00000516338 101 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 MIR5692C2-201ENST00000577959 77 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 SNORD53-201ENST00000579969 78 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.19□□□□□ -1.9
COL6A1P12109 U1.23-201ENST00000610293 146 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 RNU1-68P-201ENST00000615382 146 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 U1.39-201ENST00000621562 146 ntBASIC3.19□□□□□ -1.9
COL6A1P12109 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A1P12109 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
COL6A1P12109 RNU6-486P-201ENST00000363116 107 ntBASIC3.18□□□□□ -1.9
COL6A1P12109 RNU1-112P-201ENST00000364401 164 ntBASIC3.18□□□□□ -1.9
COL6A1P12109 RNU6-211P-201ENST00000384047 107 ntBASIC3.18□□□□□ -1.9
COL6A1P12109 MIR613-201ENST00000385248 95 ntBASIC3.18□□□□□ -1.9
COL6A1P12109 AL133475.1-201ENST00000404414 305 ntBASIC3.18□□□□□ -1.9
COL6A1P12109 MIR548I2-201ENST00000408348 149 ntBASIC3.18□□□□□ -1.9
COL6A1P12109 RN7SKP123-201ENST00000410732 291 ntBASIC3.18□□□□□ -1.9
COL6A1P12109 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.18□□□□□ -1.9
COL6A1P12109 AC140059.1-201ENST00000489238 361 ntBASIC3.18□□□□□ -1.9
COL6A1P12109 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.18□□□□□ -1.9
COL6A1P12109 MIR3145-201ENST00000580727 82 ntBASIC3.18□□□□□ -1.9
COL6A1P12109 AC069294.1-201ENST00000608397 350 ntBASIC3.18□□□□□ -1.9
COL6A1P12109 MIR6817-201ENST00000615588 66 ntBASIC3.18□□□□□ -1.9
COL6A1P12109 AL365265.1-201ENST00000621045 234 ntBASIC3.18□□□□□ -1.9
COL6A1P12109 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
COL6A1P12109 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL6A1P12109 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
COL6A1P12109 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.17□□□□□ -1.9
COL6A1P12109 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL6A1P12109 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL6A1P12109 RNA5SP383-201ENST00000362934 120 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 VTRNA1-1-201ENST00000363120 99 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 RNU6-1264P-201ENST00000383891 107 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 SNORA3.2-201ENST00000408221 125 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 AC009963.1-201ENST00000417265 157 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 AL606753.1-201ENST00000427435 87 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 snoU13.14-201ENST00000459372 104 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 RNU7-200P-201ENST00000516105 62 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 SNORA64.4-201ENST00000516632 81 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 MIR3144-201ENST00000579460 79 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 MIR4308-201ENST00000580634 81 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 snoU18.1-201ENST00000629629 71 ntBASIC3.17□□□□□ -1.9
COL6A1P12109 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.17□□□□□ -1.9
COL6A1P12109 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL6A1P12109 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.16□□□□□ -1.9
COL6A1P12109 Y_RNA.8-201ENST00000362353 102 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 RNU6-1272P-201ENST00000362776 107 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 AL138827.1-201ENST00000402666 306 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 AL357139.1-201ENST00000407792 426 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 RNU6-1199P-201ENST00000411249 104 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.16□□□□□ -1.9
COL6A1P12109 RNU6-1219P-201ENST00000516143 112 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 RNU6-966P-201ENST00000516479 104 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 RNU6-107P-201ENST00000516643 102 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 AC009127.3-201ENST00000570531 403 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 DEFB117-201ENST00000602356 141 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 AC104465.1-201ENST00000611365 139 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 PCGEM1.1-201ENST00000613431 131 ntBASIC3.16□□□□□ -1.9
COL6A1P12109 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.9
COL6A1P12109 SNORD56.3-201ENST00000363507 71 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 U3.9-201ENST00000363823 204 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 SNORD50.2-201ENST00000365465 70 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 RNU6-804P-201ENST00000384286 107 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 RNA5SP201-201ENST00000410316 124 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 RNU6-394P-201ENST00000410735 107 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 RNA5SP21-201ENST00000410917 96 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.15□□□□□ -1.91
COL6A1P12109 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.15□□□□□ -1.91
COL6A1P12109 BTF3P11-201ENST00000426582 477 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.15□□□□□ -1.91
COL6A1P12109 RPL36AP48-201ENST00000485521 314 ntBASIC3.15□□□□□ -1.91
COL6A1P12109 CKS1BP2-201ENST00000497342 240 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms