Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 RNU6-38P-201ENST00000384085 107 ntBASIC0.83□□□□□ -2.28
NPHP4O75161 SNORA75-201ENST00000384158 137 ntBASIC0.83□□□□□ -2.28
NPHP4O75161 MIR586-201ENST00000385035 97 ntBASIC0.83□□□□□ -2.28
NPHP4O75161 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
NPHP4O75161 MRPS10P2-201ENST00000431226 381 ntBASIC0.83□□□□□ -2.28
NPHP4O75161 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC0.83□□□□□ -2.28
NPHP4O75161 Y_RNA.695-201ENST00000516715 107 ntBASIC0.83□□□□□ -2.28
NPHP4O75161 AC073648.5-201ENST00000603502 305 ntBASIC0.83□□□□□ -2.28
NPHP4O75161 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.83□□□□□ -2.28
NPHP4O75161 AC106754.2-201ENST00000623006 233 ntBASIC0.83□□□□□ -2.28
NPHP4O75161 AC027335.2-201ENST00000624030 375 ntBASIC0.83□□□□□ -2.28
NPHP4O75161 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.83□□□□□ -2.28
NPHP4O75161 AC073544.1-201ENST00000600110 1595 ntBASIC0.83□□□□□ -2.28
NPHP4O75161 Y_RNA.1-201ENST00000352915 104 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 Y_RNA.409-201ENST00000383990 98 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 RNU6-1103P-201ENST00000384150 107 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 RNU6-1031P-201ENST00000384773 107 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 RPS26P42-201ENST00000413485 326 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.82□□□□□ -2.28
NPHP4O75161 AC007215.1-201ENST00000464893 276 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 RPL23AP75-201ENST00000491601 451 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 RNU6-1332P-201ENST00000516666 104 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 Y_RNA.717-201ENST00000517106 92 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 AC025647.1-201ENST00000517879 253 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 AC119751.7-201ENST00000600494 245 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 SNRPGP20-201ENST00000604477 205 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 AC087752.4-201ENST00000605911 462 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 AL078596.1-201ENST00000624856 447 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 MIR6086-201ENST00000638065 55 ntBASIC0.82□□□□□ -2.28
NPHP4O75161 RNU6-1123P-201ENST00000362347 106 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 SNORD87-201ENST00000364849 89 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 VTRNA1-3-201ENST00000365645 89 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 Y_RNA.412-201ENST00000384001 104 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 RNU6-1186P-201ENST00000410429 97 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.81□□□□□ -2.28
NPHP4O75161 RPS3AP17-201ENST00000472594 777 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.81□□□□□ -2.28
NPHP4O75161 RNU1-142P-201ENST00000516682 145 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.81□□□□□ -2.28
NPHP4O75161 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.81□□□□□ -2.28
NPHP4O75161 MIR5695-201ENST00000579717 85 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AC243829.6-201ENST00000612652 106 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AC137590.2-201ENST00000619709 240 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 MIR8054-201ENST00000620877 86 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 snoZ196.1-201ENST00000625269 89 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.81□□□□□ -2.28
NPHP4O75161 MTND4P5-201ENST00000435821 1374 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 Y_RNA.296-201ENST00000364930 108 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 MIR515-2-201ENST00000384883 83 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 MIR515-1-201ENST00000384884 83 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AL049545.1-201ENST00000401856 572 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 RNA5SP504-201ENST00000410676 117 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 RNU2-70P-201ENST00000410718 179 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC0.81□□□□□ -2.28
NPHP4O75161 MTCO2P16-201ENST00000436962 677 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 BET1P1-201ENST00000482276 359 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.81□□□□□ -2.28
NPHP4O75161 UBL5P1-201ENST00000507979 193 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 SNORA19.2-201ENST00000516013 114 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 SNORA40.12-201ENST00000516329 111 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AC008088.1-201ENST00000580993 280 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AC146944.4-201ENST00000602697 718 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AL390123.1-201ENST00000603216 237 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AC092807.2-201ENST00000609367 243 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AL021879.1-201ENST00000611756 288 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AL158063.1-201ENST00000615349 536 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.81□□□□□ -2.28
NPHP4O75161 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
NPHP4O75161 RNU6-1240P-201ENST00000365155 104 ntBASIC0.8□□□□□ -2.28
NPHP4O75161 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
NPHP4O75161 SNORA12.1-201ENST00000390873 148 ntBASIC0.8□□□□□ -2.28
NPHP4O75161 AL359672.1-201ENST00000442302 409 ntBASIC0.8□□□□□ -2.28
NPHP4O75161 AC074290.1-201ENST00000448883 135 ntBASIC0.8□□□□□ -2.28
NPHP4O75161 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.8□□□□□ -2.28
NPHP4O75161 AC048334.1-201ENST00000477975 159 ntBASIC0.8□□□□□ -2.28
NPHP4O75161 RNU6-922P-201ENST00000516753 99 ntBASIC0.8□□□□□ -2.28
NPHP4O75161 RNA5SP454-201ENST00000517231 127 ntBASIC0.8□□□□□ -2.28
NPHP4O75161 AC024995.1-201ENST00000523014 93 ntBASIC0.8□□□□□ -2.28
NPHP4O75161 CPDP1-201ENST00000579660 283 ntBASIC0.8□□□□□ -2.28
NPHP4O75161 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.8□□□□□ -2.28
NPHP4O75161 MIR8076-201ENST00000611401 83 ntBASIC0.8□□□□□ -2.28
NPHP4O75161 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.8□□□□□ -2.28
NPHP4O75161 AL359697.1-201ENST00000624879 587 ntBASIC0.8□□□□□ -2.28
NPHP4O75161 RNU6-82P-201ENST00000363970 107 ntBASIC0.79□□□□□ -2.28
NPHP4O75161 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
NPHP4O75161 RNU6-440P-201ENST00000390882 105 ntBASIC0.79□□□□□ -2.28
NPHP4O75161 Z82188.1-201ENST00000436709 154 ntBASIC0.79□□□□□ -2.28
NPHP4O75161 RNU6-956P-201ENST00000458868 103 ntBASIC0.79□□□□□ -2.28
NPHP4O75161 HMGB1P29-201ENST00000505659 499 ntBASIC0.79□□□□□ -2.28
NPHP4O75161 SNORA70.22-201ENST00000517160 124 ntBASIC0.79□□□□□ -2.28
NPHP4O75161 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.79□□□□□ -2.28
NPHP4O75161 AL359075.3-201ENST00000613288 217 ntBASIC0.79□□□□□ -2.28
NPHP4O75161 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.79□□□□□ -2.28
NPHP4O75161 MIR5087-201ENST00000635826 76 ntBASIC0.79□□□□□ -2.28
NPHP4O75161 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
NPHP4O75161 RNU6-727P-201ENST00000363592 107 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 Y_RNA.167-201ENST00000363735 109 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 RNU6-784P-201ENST00000384330 106 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 AL590002.1-201ENST00000406554 418 ntBASIC0.78□□□□□ -2.28
NPHP4O75161 RNU4-55P-201ENST00000410731 137 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms