Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-1012P-201ENST00000516606 109 ntBASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 SNORA31.25-201ENST00000517242 134 ntBASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 MIR4659A-201ENST00000580269 81 ntBASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.55□□□□□ -1.84
CCDC9Q9Y3X0 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 MIR340-201ENST00000362125 95 ntBASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 MIR148B-201ENST00000362252 99 ntBASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 RNA5SP493-201ENST00000364115 91 ntBASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 SNORD114-6-201ENST00000364393 72 ntBASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 RNU6-408P-201ENST00000515910 100 ntBASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 RNU6-856P-201ENST00000516959 98 ntBASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 AP005660.1-201ENST00000522972 293 ntBASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 AK6P2-201ENST00000549020 471 ntBASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 AC078899.2-201ENST00000595282 212 ntBASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 AL159152.1-201ENST00000635019 2587 ntBASIC3.54□□□□□ -1.84
CCDC9Q9Y3X0 MIR27B-201ENST00000385129 97 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 RNU11-3P-201ENST00000391111 133 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 RNA5SP465-201ENST00000391195 109 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 SNORD23.1-201ENST00000408212 104 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 ELOCP21-201ENST00000412558 336 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 AC244505.4-201ENST00000434905 287 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 SSXP5-201ENST00000443473 287 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 RPL39P40-201ENST00000445481 146 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 UQCRHP3-201ENST00000451503 251 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 RPS27AP9-201ENST00000477681 438 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 RNA5SP458-201ENST00000516188 119 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 Y_RNA.721-201ENST00000517207 102 ntBASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.53□□□□□ -1.84
CCDC9Q9Y3X0 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 Y_RNA.164-201ENST00000363709 102 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 MIR1185-2-201ENST00000408687 86 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 RNU6-101P-201ENST00000410323 104 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 AC008134.1-201ENST00000420943 193 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 DPH3P2-201ENST00000422618 250 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 AC011753.1-201ENST00000451001 220 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 RN7SL75P-201ENST00000461926 281 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 AC010469.2-201ENST00000496412 480 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 RNA5SP320-201ENST00000516263 124 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 AC124312.5-201ENST00000604451 268 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 AC011476.5-201ENST00000615594 130 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 AC240442.1-201ENST00000616055 283 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 AL353997.5-201ENST00000618886 171 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 MTND4P1-201ENST00000457501 1466 ntBASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.52□□□□□ -1.85
CCDC9Q9Y3X0 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
CCDC9Q9Y3X0 RNU6-1266P-201ENST00000362794 105 ntBASIC3.51□□□□□ -1.85
CCDC9Q9Y3X0 MRPL35P1-201ENST00000404272 572 ntBASIC3.51□□□□□ -1.85
CCDC9Q9Y3X0 RNA5SP475-201ENST00000410568 110 ntBASIC3.51□□□□□ -1.85
CCDC9Q9Y3X0 RAB28P5-201ENST00000427490 651 ntBASIC3.51□□□□□ -1.85
CCDC9Q9Y3X0 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC9Q9Y3X0 RNU6-221P-201ENST00000459541 99 ntBASIC3.51□□□□□ -1.85
CCDC9Q9Y3X0 SUMO2P18-201ENST00000518873 252 ntBASIC3.51□□□□□ -1.85
CCDC9Q9Y3X0 AL109918.3-201ENST00000603072 338 ntBASIC3.51□□□□□ -1.85
CCDC9Q9Y3X0 AC006001.4-201ENST00000622243 395 ntBASIC3.51□□□□□ -1.85
CCDC9Q9Y3X0 RNU1-35P-201ENST00000362782 153 ntBASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 Y_RNA.158-201ENST00000363651 101 ntBASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 SNORA33.2-201ENST00000365413 134 ntBASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 Y_RNA.389-201ENST00000383924 113 ntBASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 RNU6-1310P-201ENST00000384153 107 ntBASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 AC107222.1-201ENST00000510899 637 ntBASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 AC022616.4-201ENST00000522985 181 ntBASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 AC007229.1-201ENST00000590455 412 ntBASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 Y_RNA.772-201ENST00000606692 102 ntBASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 AC040896.1-201ENST00000613819 479 ntBASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 AC012640.5-201ENST00000623897 319 ntBASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 MIR3674-201ENST00000636576 68 ntBASIC3.5□□□□□ -1.85
CCDC9Q9Y3X0 RNU6-639P-201ENST00000384074 107 ntBASIC3.49□□□□□ -1.85
CCDC9Q9Y3X0 RNU1-138P-201ENST00000384093 164 ntBASIC3.49□□□□□ -1.85
CCDC9Q9Y3X0 RNU6-738P-201ENST00000384531 106 ntBASIC3.49□□□□□ -1.85
CCDC9Q9Y3X0 RN7SL636P-201ENST00000497504 294 ntBASIC3.49□□□□□ -1.85
CCDC9Q9Y3X0 Y_RNA.713-201ENST00000517013 96 ntBASIC3.49□□□□□ -1.85
CCDC9Q9Y3X0 MIR3169-201ENST00000578032 83 ntBASIC3.49□□□□□ -1.85
CCDC9Q9Y3X0 MIR3605-201ENST00000583214 100 ntBASIC3.49□□□□□ -1.85
CCDC9Q9Y3X0 U4.3-201ENST00000621047 82 ntBASIC3.49□□□□□ -1.85
CCDC9Q9Y3X0 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
CCDC9Q9Y3X0 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 SNORA72.2-201ENST00000365028 127 ntBASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 Y_RNA.471-201ENST00000384312 102 ntBASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 MIR606-201ENST00000384851 96 ntBASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 MIR181A2-201ENST00000384863 110 ntBASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 MIR597-201ENST00000384968 97 ntBASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 ATP5J2P3-201ENST00000451550 258 ntBASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 U8.20-201ENST00000459445 131 ntBASIC3.48□□□□□ -1.85
CCDC9Q9Y3X0 SNORA31.15-201ENST00000516771 132 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms