Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 MIR548S-201ENST00000581352 82 ntBASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 SNORD11B-201ENST00000607707 90 ntBASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 AL132765.2-201ENST00000610812 351 ntBASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 AC083806.3-201ENST00000614016 455 ntBASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 RNU6-727P-201ENST00000363592 107 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 RNU6-310P-201ENST00000384655 107 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 RNU1-139P-201ENST00000391307 165 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 MIR190B-201ENST00000401119 79 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 AC060773.1-201ENST00000421698 310 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 AC008834.1-201ENST00000511612 175 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 RNU6-1114P-201ENST00000516022 107 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 RNU6-120P-201ENST00000516077 103 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 SNORA25.15-201ENST00000516487 89 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 RNU6-875P-201ENST00000516488 106 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 RNU2-34P-201ENST00000516534 121 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 AK6P2-201ENST00000549020 471 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 MIR3198-2-201ENST00000577868 80 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 MIR5695-201ENST00000579717 85 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 MIR3618-201ENST00000580330 88 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 AC005899.2-201ENST00000584353 90 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 AC092794.2-201ENST00000620933 563 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 AL078596.1-201ENST00000624856 447 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 MTND5P16-201ENST00000460269 1703 ntBASIC1.85□□□□□ -2.11
CPSF3Q9UKF6 RNU6-280P-201ENST00000364145 104 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 SNORD87-201ENST00000364849 89 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 Y_RNA.415-201ENST00000384012 112 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 RNU6-1235P-201ENST00000384559 107 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 RNU6-700P-201ENST00000391043 107 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 USP9YP16-201ENST00000430287 407 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 AC099677.2-201ENST00000436385 175 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 USP9YP23-201ENST00000455085 407 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 RNA5SP57-201ENST00000459463 123 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 RNU6-498P-201ENST00000459468 107 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 AC114982.1-201ENST00000469402 321 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 AC108210.2-201ENST00000503681 201 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 RNU6-507P-201ENST00000516045 100 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 RNU6-559P-201ENST00000516151 98 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 SNORA44.1-201ENST00000517031 108 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 FRG2DP-202ENST00000566967 323 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 MIR4524B-201ENST00000581569 115 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 AC068205.3-201ENST00000636385 468 ntBASIC1.84□□□□□ -2.11
CPSF3Q9UKF6 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
CPSF3Q9UKF6 RNU6-281P-201ENST00000384212 103 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 RNU6-793P-201ENST00000384233 104 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 RNA5SP100-201ENST00000410903 110 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 RNA5SP59-201ENST00000410922 110 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 RPL31P63-201ENST00000422565 375 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 MTCYBP10-201ENST00000424905 650 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 ATP5J2P3-201ENST00000451550 258 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 RNU7-57P-201ENST00000459540 60 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 AC027575.1-201ENST00000481064 460 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 RPL17P19-201ENST00000489069 552 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 RNU6-1041P-201ENST00000516254 102 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 RNU6-948P-201ENST00000516374 107 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 RNU6-307P-201ENST00000516743 106 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 SUMO2P18-201ENST00000518873 252 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 AC004584.2-201ENST00000570407 410 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 AC125232.2-201ENST00000592457 143 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 MZT1P2-201ENST00000604387 248 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.83□□□□□ -2.12
CPSF3Q9UKF6 WWP1P1-201ENST00000466609 2769 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 RNA5SP190-201ENST00000365222 118 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 Y_RNA.364-201ENST00000365532 101 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 RNU6-890P-201ENST00000384121 107 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 SNORD116-29-201ENST00000384516 83 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 MIR548B-201ENST00000385247 97 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 SNORA75.6-201ENST00000391318 127 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 MIR934-201ENST00000401241 83 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 AL117342.1-201ENST00000404861 406 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 RNU6-57P-201ENST00000411348 103 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 EIF1P2-201ENST00000428233 350 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 RPL23AP50-201ENST00000434149 455 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 MTCO3P10-201ENST00000455912 772 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 U8.22-201ENST00000459141 133 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 AC011406.1-201ENST00000512440 370 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 AC093303.1-201ENST00000514549 295 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 CBX3P4-201ENST00000538909 354 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 HSBP1P1-201ENST00000555205 166 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 SUB1P4-201ENST00000566062 339 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 MIR3122-201ENST00000577243 73 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 MIR5094-201ENST00000578766 85 ntBASIC1.82□□□□□ -2.12
CPSF3Q9UKF6 MIR5690-201ENST00000583739 73 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 199.8 ms