Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 Y_RNA.106-201ENST00000363189 100 ntBASIC1.9□□□□□ -2.11
VPS28Q9UK41 RNU6-439P-201ENST00000384188 106 ntBASIC1.9□□□□□ -2.11
VPS28Q9UK41 MIR548B-201ENST00000385247 97 ntBASIC1.9□□□□□ -2.11
VPS28Q9UK41 MIR190B-201ENST00000401119 79 ntBASIC1.9□□□□□ -2.11
VPS28Q9UK41 AL591806.2-201ENST00000433122 173 ntBASIC1.9□□□□□ -2.11
VPS28Q9UK41 HMGN2P23-201ENST00000456759 269 ntBASIC1.9□□□□□ -2.11
VPS28Q9UK41 RPL7P42-201ENST00000481005 679 ntBASIC1.9□□□□□ -2.11
VPS28Q9UK41 HMGB3P17-201ENST00000504195 649 ntBASIC1.9□□□□□ -2.11
VPS28Q9UK41 Y_RNA.691-201ENST00000516611 103 ntBASIC1.9□□□□□ -2.11
VPS28Q9UK41 AC025647.1-201ENST00000517879 253 ntBASIC1.9□□□□□ -2.11
VPS28Q9UK41 AC105029.1-201ENST00000520250 669 ntBASIC1.9□□□□□ -2.11
VPS28Q9UK41 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.9□□□□□ -2.11
VPS28Q9UK41 AC022306.2-201ENST00000617563 647 ntBASIC1.9□□□□□ -2.11
VPS28Q9UK41 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.11
VPS28Q9UK41 RNU6-222P-201ENST00000362438 107 ntBASIC1.89□□□□□ -2.11
VPS28Q9UK41 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.89□□□□□ -2.11
VPS28Q9UK41 AC016909.1-201ENST00000415916 166 ntBASIC1.89□□□□□ -2.11
VPS28Q9UK41 PDCL2P1-201ENST00000419302 352 ntBASIC1.89□□□□□ -2.11
VPS28Q9UK41 HSPE1P21-201ENST00000438283 308 ntBASIC1.89□□□□□ -2.11
VPS28Q9UK41 Y_RNA.635-201ENST00000459041 101 ntBASIC1.89□□□□□ -2.11
VPS28Q9UK41 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.89□□□□□ -2.11
VPS28Q9UK41 RPL36AP21-201ENST00000490372 323 ntBASIC1.89□□□□□ -2.11
VPS28Q9UK41 Y_RNA.683-201ENST00000516508 93 ntBASIC1.89□□□□□ -2.11
VPS28Q9UK41 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.89□□□□□ -2.11
VPS28Q9UK41 AC012493.3-201ENST00000604494 112 ntBASIC1.89□□□□□ -2.11
VPS28Q9UK41 TPTEP1-208ENST00000636884 213 ntBASIC1.89□□□□□ -2.11
VPS28Q9UK41 MTND5P16-201ENST00000460269 1703 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 RNU6-414P-201ENST00000363705 104 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 SNORA63D-201ENST00000364359 132 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 RNU6-1240P-201ENST00000365155 104 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 RNU6-417P-201ENST00000384712 107 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
VPS28Q9UK41 SNORA26.9-201ENST00000391322 122 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 MIR1185-2-201ENST00000408687 86 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.88□□□□□ -2.11
VPS28Q9UK41 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS28Q9UK41 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS28Q9UK41 AL353997.1-201ENST00000432936 108 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 HSPE1P9-201ENST00000440046 311 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.88□□□□□ -2.11
VPS28Q9UK41 PRDX4P1-201ENST00000507189 574 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 RNA5SP481-201ENST00000516814 122 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 RNA5SP437-201ENST00000517249 129 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 AC093023.1-201ENST00000547375 507 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.88□□□□□ -2.11
VPS28Q9UK41 DEFB122-202ENST00000569013 197 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 AC090617.3-201ENST00000573670 475 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 MIR8074-201ENST00000615081 81 ntBASIC1.88□□□□□ -2.11
VPS28Q9UK41 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.88□□□□□ -2.11
VPS28Q9UK41 Y_RNA.364-201ENST00000365532 101 ntBASIC1.87□□□□□ -2.11
VPS28Q9UK41 RNU6-281P-201ENST00000384212 103 ntBASIC1.87□□□□□ -2.11
VPS28Q9UK41 MIR764-201ENST00000390811 85 ntBASIC1.87□□□□□ -2.11
VPS28Q9UK41 SNORA75.4-201ENST00000391278 119 ntBASIC1.87□□□□□ -2.11
VPS28Q9UK41 RPL23AP50-201ENST00000434149 455 ntBASIC1.87□□□□□ -2.11
VPS28Q9UK41 snoU13.23-201ENST00000458863 104 ntBASIC1.87□□□□□ -2.11
VPS28Q9UK41 RNU6-548P-201ENST00000517083 115 ntBASIC1.87□□□□□ -2.11
VPS28Q9UK41 AK6P2-201ENST00000549020 471 ntBASIC1.87□□□□□ -2.11
VPS28Q9UK41 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS28Q9UK41 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS28Q9UK41 MTND5P35-201ENST00000557537 1720 ntBASIC1.87□□□□□ -2.11
VPS28Q9UK41 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.87□□□□□ -2.11
VPS28Q9UK41 MZT1P2-201ENST00000604387 248 ntBASIC1.87□□□□□ -2.11
VPS28Q9UK41 AC099654.14-201ENST00000638599 341 ntBASIC1.87□□□□□ -2.11
VPS28Q9UK41 MIR424-201ENST00000362227 98 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 RNU6-1266P-201ENST00000362794 105 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 SNORA16.1-201ENST00000364597 132 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 Y_RNA.287-201ENST00000364853 94 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 SNORD81.2-201ENST00000365153 76 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 Y_RNA.404-201ENST00000383978 102 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 RNU6-331P-201ENST00000384724 107 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 MIR9-3-201ENST00000385084 90 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 RNU6-360P-201ENST00000390944 104 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 FTH1P12-201ENST00000432137 551 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 RBMX2P4-201ENST00000441256 376 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.86□□□□□ -2.11
VPS28Q9UK41 AC007677.1-201ENST00000445757 515 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 AC108210.2-201ENST00000503681 201 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 AC107393.1-201ENST00000512403 346 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.86□□□□□ -2.11
VPS28Q9UK41 SCARNA16.2-201ENST00000516520 172 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 AC024995.1-201ENST00000523014 93 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 MIR3124-201ENST00000582636 67 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 AC084768.2-201ENST00000622736 221 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 AL359757.2-201ENST00000624309 274 ntBASIC1.86□□□□□ -2.11
VPS28Q9UK41 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.86□□□□□ -2.11
VPS28Q9UK41 RNA5SP213-201ENST00000391031 106 ntBASIC1.85□□□□□ -2.11
VPS28Q9UK41 RNA5SP323-201ENST00000391094 133 ntBASIC1.85□□□□□ -2.11
VPS28Q9UK41 MIR934-201ENST00000401241 83 ntBASIC1.85□□□□□ -2.11
VPS28Q9UK41 EIF1P2-201ENST00000428233 350 ntBASIC1.85□□□□□ -2.11
VPS28Q9UK41 AC098614.3-201ENST00000438957 440 ntBASIC1.85□□□□□ -2.11
VPS28Q9UK41 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC1.85□□□□□ -2.11
VPS28Q9UK41 UBE2V1P7-201ENST00000446395 340 ntBASIC1.85□□□□□ -2.11
VPS28Q9UK41 RNU7-87P-201ENST00000459343 62 ntBASIC1.85□□□□□ -2.11
VPS28Q9UK41 MTND4P17-201ENST00000470444 350 ntBASIC1.85□□□□□ -2.11
VPS28Q9UK41 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.85□□□□□ -2.11
VPS28Q9UK41 AC004584.2-201ENST00000570407 410 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 132.9 ms