Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
DDX41Q9UJV9 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.42□□□□□ -1.86
DDX41Q9UJV9 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.42□□□□□ -1.86
DDX41Q9UJV9 RNU6-454P-201ENST00000364292 107 ntBASIC3.42□□□□□ -1.86
DDX41Q9UJV9 MIR1185-2-201ENST00000408687 86 ntBASIC3.42□□□□□ -1.86
DDX41Q9UJV9 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.42□□□□□ -1.86
DDX41Q9UJV9 MTCO1P5-201ENST00000433573 344 ntBASIC3.42□□□□□ -1.86
DDX41Q9UJV9 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.42□□□□□ -1.86
DDX41Q9UJV9 AC091959.1-201ENST00000495857 238 ntBASIC3.42□□□□□ -1.86
DDX41Q9UJV9 RNU6-948P-201ENST00000516374 107 ntBASIC3.42□□□□□ -1.86
DDX41Q9UJV9 RNA5SP490-201ENST00000517141 136 ntBASIC3.42□□□□□ -1.86
DDX41Q9UJV9 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.42□□□□□ -1.86
DDX41Q9UJV9 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.42□□□□□ -1.86
DDX41Q9UJV9 AL162424.1-201ENST00000602325 221 ntBASIC3.42□□□□□ -1.86
DDX41Q9UJV9 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.42□□□□□ -1.86
DDX41Q9UJV9 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.42□□□□□ -1.86
DDX41Q9UJV9 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.42□□□□□ -1.86
DDX41Q9UJV9 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
DDX41Q9UJV9 AC009487.4-201ENST00000624969 3585 ntBASIC3.41□□□□□ -1.86
DDX41Q9UJV9 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.41□□□□□ -1.86
DDX41Q9UJV9 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
DDX41Q9UJV9 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
DDX41Q9UJV9 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.41□□□□□ -1.86
DDX41Q9UJV9 Y_RNA.418-201ENST00000384029 102 ntBASIC3.41□□□□□ -1.86
DDX41Q9UJV9 SNORD58.1-201ENST00000391313 66 ntBASIC3.41□□□□□ -1.86
DDX41Q9UJV9 AL590004.2-201ENST00000404787 371 ntBASIC3.41□□□□□ -1.86
DDX41Q9UJV9 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.41□□□□□ -1.86
DDX41Q9UJV9 AL445687.1-201ENST00000439946 251 ntBASIC3.41□□□□□ -1.86
DDX41Q9UJV9 HMGN2P18-201ENST00000450680 270 ntBASIC3.41□□□□□ -1.86
DDX41Q9UJV9 ATP5EP1-201ENST00000510257 156 ntBASIC3.41□□□□□ -1.86
DDX41Q9UJV9 SNORA27.4-201ENST00000516650 95 ntBASIC3.41□□□□□ -1.86
DDX41Q9UJV9 MIR1248-201ENST00000629190 106 ntBASIC3.41□□□□□ -1.86
DDX41Q9UJV9 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
DDX41Q9UJV9 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.4□□□□□ -1.86
DDX41Q9UJV9 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.4□□□□□ -1.86
DDX41Q9UJV9 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.4□□□□□ -1.87
DDX41Q9UJV9 AC073325.2-201ENST00000339545 159 ntBASIC3.4□□□□□ -1.87
DDX41Q9UJV9 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
DDX41Q9UJV9 Y_RNA.539-201ENST00000384635 107 ntBASIC3.4□□□□□ -1.87
DDX41Q9UJV9 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
DDX41Q9UJV9 AC003685.2-201ENST00000422795 395 ntBASIC3.4□□□□□ -1.87
DDX41Q9UJV9 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.4□□□□□ -1.87
DDX41Q9UJV9 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.4□□□□□ -1.87
DDX41Q9UJV9 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.4□□□□□ -1.87
DDX41Q9UJV9 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.4□□□□□ -1.87
DDX41Q9UJV9 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.4□□□□□ -1.87
DDX41Q9UJV9 snoZ196.1-201ENST00000625269 89 ntBASIC3.4□□□□□ -1.87
DDX41Q9UJV9 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
DDX41Q9UJV9 UBE2WP1-201ENST00000362030 340 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 RNU1-23P-201ENST00000363361 144 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 RNU6-743P-201ENST00000364151 106 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 Y_RNA.329-201ENST00000365209 107 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 RNU6-975P-201ENST00000384296 105 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 RNU6-710P-201ENST00000410424 105 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.39□□□□□ -1.87
DDX41Q9UJV9 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.39□□□□□ -1.87
DDX41Q9UJV9 AC022018.1-201ENST00000430685 241 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.39□□□□□ -1.87
DDX41Q9UJV9 Z98949.2-201ENST00000440996 144 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 AC016925.1-201ENST00000458303 298 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 AC091826.1-201ENST00000514065 313 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 SNORA70.12-201ENST00000516084 153 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 RNU6-436P-201ENST00000516171 114 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 Y_RNA.679-201ENST00000516416 91 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 RPL21P9-201ENST00000556149 474 ntBASIC3.39□□□□□ -1.87
DDX41Q9UJV9 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
DDX41Q9UJV9 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.39□□□□□ -1.87
DDX41Q9UJV9 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 RNU4-80P-201ENST00000363200 141 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 SNORA5B-201ENST00000363786 132 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 Y_RNA.243-201ENST00000364481 109 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 Y_RNA.275-201ENST00000364726 110 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 RNU6-740P-201ENST00000364734 105 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 SNORD88.1-201ENST00000408684 91 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 Y_RNA.590-201ENST00000410140 107 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 AL137159.1-201ENST00000452808 512 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
DDX41Q9UJV9 RNU6-966P-201ENST00000516479 104 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 RNU2-34P-201ENST00000516534 121 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 RN7SKP40-201ENST00000517211 242 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.38□□□□□ -1.87
DDX41Q9UJV9 DEFB117-201ENST00000602356 141 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 AC009779.6-201ENST00000603972 165 ntBASIC3.38□□□□□ -1.87
DDX41Q9UJV9 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
DDX41Q9UJV9 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
DDX41Q9UJV9 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.37□□□□□ -1.87
DDX41Q9UJV9 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
DDX41Q9UJV9 RNU6-1180P-201ENST00000364935 107 ntBASIC3.37□□□□□ -1.87
DDX41Q9UJV9 AL031003.1-201ENST00000404229 172 ntBASIC3.37□□□□□ -1.87
DDX41Q9UJV9 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.37□□□□□ -1.87
DDX41Q9UJV9 AL135938.1-201ENST00000443141 297 ntBASIC3.37□□□□□ -1.87
DDX41Q9UJV9 RN7SL20P-201ENST00000488827 297 ntBASIC3.37□□□□□ -1.87
DDX41Q9UJV9 MIR3145-201ENST00000580727 82 ntBASIC3.37□□□□□ -1.87
DDX41Q9UJV9 U6.115-201ENST00000636045 103 ntBASIC3.37□□□□□ -1.87
DDX41Q9UJV9 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.37□□□□□ -1.87
DDX41Q9UJV9 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
DDX41Q9UJV9 AC108206.1-201ENST00000570186 4159 ntBASIC3.36□□□□□ -1.87
DDX41Q9UJV9 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
DDX41Q9UJV9 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.36□□□□□ -1.87
DDX41Q9UJV9 SNORD115-30-201ENST00000364117 82 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 163.4 ms