Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 AL669831.3-213ENST00000636676 183 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 AL159152.1-201ENST00000635019 2587 ntBASIC1.75□□□□□ -2.13
RPF1Q9H9Y2 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 MIR378A-201ENST00000362177 66 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 RNY1P16-201ENST00000363063 111 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 Y_RNA.106-201ENST00000363189 100 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 RNU6-137P-201ENST00000363680 108 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 SNORD87-201ENST00000364849 89 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 MIR586-201ENST00000385035 97 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 SNORA17.3-201ENST00000391159 129 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 RNU6-370P-201ENST00000411008 104 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 USMG5P1-201ENST00000425964 177 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 AC099677.2-201ENST00000436385 175 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 Y_RNA.635-201ENST00000459041 101 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 HMGB3P17-201ENST00000504195 649 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 RNU6-856P-201ENST00000516959 98 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 7SK.7-201ENST00000603504 247 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 AC008873.1-201ENST00000625051 138 ntBASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
RPF1Q9H9Y2 RNU6-727P-201ENST00000363592 107 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 MIR320B2-201ENST00000408479 138 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 RNA5SP100-201ENST00000410903 110 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 RNA5SP59-201ENST00000410922 110 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 RPL23AP36-201ENST00000413895 458 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 AC112492.4-201ENST00000456549 352 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 AC091179.3-201ENST00000474761 144 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 RNU6-1041P-201ENST00000516254 102 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 RNU6-277P-201ENST00000516272 106 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 RNU6-1198P-201ENST00000516904 67 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 SNORA44.1-201ENST00000517031 108 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 APOOP3-201ENST00000536787 586 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 PISRT1.1-201ENST00000616930 107 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
RPF1Q9H9Y2 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 Y_RNA.142-201ENST00000363491 102 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 RNU6-1188P-201ENST00000363795 107 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 Y_RNA.646-201ENST00000410980 101 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 NCOR1P3-201ENST00000420479 303 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 AC091951.2-201ENST00000500762 203 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 AC008834.1-201ENST00000511612 175 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 Y_RNA.706-201ENST00000516933 99 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 SUB1P4-201ENST00000566062 339 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 MIR3198-2-201ENST00000577868 80 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 SNORD53B-201ENST00000577887 78 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 MIR5695-201ENST00000579717 85 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 UBE2V2P2-201ENST00000587677 504 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 MZT1P2-201ENST00000604387 248 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 AC100812.1-201ENST00000607622 580 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 SNORD11B-201ENST00000607707 90 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.72□□□□□ -2.13
RPF1Q9H9Y2 MTND5P16-201ENST00000460269 1703 ntBASIC1.71□□□□□ -2.13
RPF1Q9H9Y2 RNU1-62P-201ENST00000362599 164 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 RNU6-862P-201ENST00000362804 105 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 Y_RNA.415-201ENST00000384012 112 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 RNU6-281P-201ENST00000384212 103 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 RNU6-1235P-201ENST00000384559 107 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 RNU6-310P-201ENST00000384655 107 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 MIR548B-201ENST00000385247 97 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 RNU1-139P-201ENST00000391307 165 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 MIR190B-201ENST00000401119 79 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 AL117342.1-201ENST00000404861 406 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 ATP5J2P3-201ENST00000451550 258 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 U8.22-201ENST00000459141 133 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 RNU6-498P-201ENST00000459468 107 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 RNU7-57P-201ENST00000459540 60 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 SUMO2P18-201ENST00000518873 252 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 AL121579.1-201ENST00000555129 305 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 MIR5094-201ENST00000578766 85 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 AL078596.1-201ENST00000624856 447 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 AC068205.3-201ENST00000636385 468 ntBASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.71□□□□□ -2.14
RPF1Q9H9Y2 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 RNY3P14-201ENST00000384309 102 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 RNU6-57P-201ENST00000411348 103 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 AC016909.1-201ENST00000415916 166 ntBASIC1.7□□□□□ -2.14
RPF1Q9H9Y2 RPL31P63-201ENST00000422565 375 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 165.5 ms