| SALL3 | Q9BXA9 | AC083973.1-205 | ENST00000518994 | 601 nt | TSL 2 BASIC | 2.92 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | MIR5695-201 | ENST00000579717 | 85 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AC090897.2-201 | ENST00000581715 | 130 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | ZNFX1-AS1_2.1-201 | ENST00000610973 | 93 nt | BASIC | 2.92 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | CATSPERB-201 | ENST00000256343 | 3623 nt | APPRIS P2 TSL 1 (best) BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | MGAT4C-211 | ENST00000621808 | 2582 nt | APPRIS P1 TSL 1 (best) BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | RNU6-545P-201 | ENST00000362681 | 104 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | Y_RNA.82-201 | ENST00000363000 | 102 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | Y_RNA.92-201 | ENST00000363043 | 102 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | Y_RNA.235-201 | ENST00000364412 | 102 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | Y_RNA.286-201 | ENST00000364813 | 102 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | Y_RNA.306-201 | ENST00000365015 | 102 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | Y_RNA.312-201 | ENST00000365089 | 102 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | Y_RNA.322-201 | ENST00000365151 | 102 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | RNU6-21P-201 | ENST00000384710 | 107 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | TRAJ48-201 | ENST00000390489 | 63 nt | APPRIS P1 BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | CYCSP48-201 | ENST00000417124 | 323 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | LINC01701-201 | ENST00000419614 | 451 nt | TSL 2 BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AC009414.1-201 | ENST00000427200 | 443 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AC012308.1-201 | ENST00000451232 | 178 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AC007395.1-201 | ENST00000451333 | 677 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | Y_RNA.650-201 | ENST00000459002 | 102 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AC234781.5-201 | ENST00000508429 | 271 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AC008869.1-201 | ENST00000510938 | 442 nt | TSL 2 BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AC074133.1-201 | ENST00000515696 | 183 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | RNU6-581P-201 | ENST00000516214 | 105 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | RNU6-346P-201 | ENST00000516288 | 111 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | Y_RNA.676-201 | ENST00000516393 | 96 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | SNORA25.14-201 | ENST00000516481 | 132 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | SNORA27.4-201 | ENST00000516650 | 95 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | RNU7-110P-201 | ENST00000516891 | 62 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | Y_RNA.777-201 | ENST00000516982 | 102 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AC006199.1-201 | ENST00000548728 | 219 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | LINC02309-201 | ENST00000553679 | 207 nt | TSL 3 BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AL139193.1-201 | ENST00000554967 | 539 nt | TSL 4 BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AC233702.2-202 | ENST00000562547 | 291 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | MIR548AI-201 | ENST00000579940 | 88 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | Y_RNA.771-201 | ENST00000598668 | 102 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AC046143.2-201 | ENST00000609789 | 160 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AL365265.1-201 | ENST00000621045 | 234 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | Y_RNA.789-201 | ENST00000622480 | 102 nt | BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | CACNB4-228 | ENST00000636598 | 7808 nt | TSL 5 BASIC | 2.91 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | ZBBX-201 | ENST00000307529 | 3071 nt | APPRIS ALT2 TSL 5 BASIC | 2.9 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | ZBBX-204 | ENST00000392767 | 3071 nt | APPRIS ALT2 TSL 5 BASIC | 2.9 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | PIK3CA-201 | ENST00000263967 | 9093 nt | APPRIS P1 TSL 2 BASIC | 2.9 | □□□□□ -1.94 | | |
| SALL3 | Q9BXA9 | AC002543.1-201 | ENST00000299783 | 1954 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | GAGE12B-201 | ENST00000361446 | 117 nt | APPRIS P1 BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | MIR410-201 | ENST00000362222 | 80 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | Y_RNA.275-201 | ENST00000364726 | 110 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | Y_RNA.292-201 | ENST00000364904 | 97 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | Y_RNA.595-201 | ENST00000410403 | 105 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | RNU6-1001P-201 | ENST00000411265 | 100 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | Y_RNA.626-201 | ENST00000411288 | 95 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | PLCL2-AS1-201 | ENST00000414844 | 311 nt | TSL 2 BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | LINC01162-201 | ENST00000447262 | 447 nt | TSL 5 BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | RPS29P20-201 | ENST00000489592 | 171 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AC034223.1-201 | ENST00000511054 | 599 nt | TSL 3 BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | LNX1-AS1-203 | ENST00000511989 | 488 nt | TSL 2 BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | SNORA40.9-201 | ENST00000515895 | 93 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | ACA59.2-201 | ENST00000517061 | 156 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AP002392.1-201 | ENST00000537692 | 208 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | TRAV1-1-201 | ENST00000542354 | 392 nt | APPRIS P1 BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | UBL5P4-201 | ENST00000562584 | 236 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | RNU6-91P-201 | ENST00000607774 | 107 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AL359198.2-201 | ENST00000611836 | 194 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | MIR3199-2-201 | ENST00000636243 | 86 nt | BASIC | 2.9 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | BX322639.1-202 | ENST00000423987 | 2213 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AC138915.1-201 | ENST00000565427 | 1685 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | N4BP2L2-211 | ENST00000504114 | 2513 nt | TSL 5 BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | RNA5SP289-201 | ENST00000362332 | 137 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | RNU6-961P-201 | ENST00000363893 | 105 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | RNU6-1180P-201 | ENST00000364935 | 107 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | RNU6-245P-201 | ENST00000384020 | 107 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AL365496.1-201 | ENST00000426885 | 215 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AC110995.1-201 | ENST00000444185 | 628 nt | TSL 3 BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | TMSB4XP3-201 | ENST00000445144 | 114 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AC117394.2-201 | ENST00000487827 | 323 nt | TSL 3 BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AC012055.2-201 | ENST00000504167 | 335 nt | TSL 3 BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | RNU6ATAC9P-201 | ENST00000516210 | 116 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | Y_RNA.683-201 | ENST00000516508 | 93 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | SNORD19.2-201 | ENST00000516978 | 73 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AP003128.1-201 | ENST00000531414 | 448 nt | TSL 2 BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | LINC02253-201 | ENST00000559321 | 448 nt | TSL 2 BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | MIR3136-201 | ENST00000583498 | 78 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AC008749.1-201 | ENST00000597650 | 306 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AC011921.3-201 | ENST00000605540 | 361 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AC010999.1-201 | ENST00000611856 | 324 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AC005520.5-201 | ENST00000613926 | 164 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AL590240.4-201 | ENST00000616908 | 390 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AC023490.3-201 | ENST00000621762 | 358 nt | TSL 3 BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | CTSLP2-204 | ENST00000629029 | 392 nt | BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | AP000550.4-201 | ENST00000639507 | 358 nt | TSL 3 BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | LINC01938-201 | ENST00000521341 | 1864 nt | TSL 2 BASIC | 2.89 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | OR8K3-203 | ENST00000641662 | 2438 nt | APPRIS P1 BASIC | 2.88 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | SEL1L2-201 | ENST00000284951 | 2224 nt | APPRIS P1 TSL 5 BASIC | 2.88 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | SNORA25.1-201 | ENST00000362326 | 128 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | SNORD56.5-201 | ENST00000364281 | 72 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | RNU6-1175P-201 | ENST00000365200 | 107 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | SNORA36A-201 | ENST00000384221 | 132 nt | BASIC | 2.88 | □□□□□ -1.95 | | |
| SALL3 | Q9BXA9 | SNORA46.1-201 | ENST00000391069 | 153 nt | BASIC | 2.88 | □□□□□ -1.95 | | |