Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 Y_RNA.28-201ENST00000362554 111 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 MIR625-201ENST00000385047 85 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 Y_RNA.645-201ENST00000391229 102 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 RNU2-48P-201ENST00000410694 191 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 RNU2-32P-201ENST00000411193 191 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 RNA5SP450-201ENST00000411206 102 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 AL590556.1-201ENST00000423231 483 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 AC096920.1-201ENST00000423991 241 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 USP9YP16-201ENST00000430287 407 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 RPL23AP3-201ENST00000453844 468 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 USP9YP23-201ENST00000455085 407 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 AC022432.1-201ENST00000595739 310 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.94□□□□□ -2.1
USP28Q96RU2 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 AC084768.2-201ENST00000622736 221 ntBASIC1.94□□□□□ -2.1
USP28Q96RU2 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.94□□□□□ -2.1
USP28Q96RU2 SNORD115-8-201ENST00000363856 82 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 RNU6-743P-201ENST00000364151 106 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 SNORD115-38-201ENST00000365037 82 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 RNA5SP126-201ENST00000365092 109 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 SNORA70B-201ENST00000384210 135 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
USP28Q96RU2 SNORA69.1-201ENST00000390904 137 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 RNU6-159P-201ENST00000391080 106 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 Y_RNA.605-201ENST00000410577 105 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 RNU6-1001P-201ENST00000411265 100 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 AL158823.1-201ENST00000418441 478 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
USP28Q96RU2 EIF1P2-201ENST00000428233 350 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.93□□□□□ -2.1
USP28Q96RU2 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.93□□□□□ -2.1
USP28Q96RU2 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.93□□□□□ -2.1
USP28Q96RU2 AC007215.1-201ENST00000464893 276 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 RPL23AP42-201ENST00000471152 471 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 AC132942.1-201ENST00000486753 483 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 HMGB3P17-201ENST00000504195 649 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 ATP5EP1-201ENST00000510257 156 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.93□□□□□ -2.1
USP28Q96RU2 RNU6-1098P-201ENST00000516772 96 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 AC022868.1-201ENST00000517767 391 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 AC233702.2-202ENST00000562547 291 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 AC006600.1-201ENST00000572529 153 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 AC090617.3-201ENST00000573670 475 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 MIR4513-201ENST00000581077 86 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 MIR5188-201ENST00000583467 113 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 MIR4719-201ENST00000585233 84 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 AC016925.2-201ENST00000605108 242 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 AL132822.1-201ENST00000617063 513 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 AC137590.2-201ENST00000619709 240 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.93□□□□□ -2.1
USP28Q96RU2 AL606534.2-204ENST00000635008 178 ntBASIC1.93□□□□□ -2.1
USP28Q96RU2 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
USP28Q96RU2 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
USP28Q96RU2 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
USP28Q96RU2 RNA5SP363-201ENST00000365072 115 ntBASIC1.92□□□□□ -2.1
USP28Q96RU2 RNU1-115P-201ENST00000365329 160 ntBASIC1.92□□□□□ -2.1
USP28Q96RU2 RNU6-546P-201ENST00000383991 107 ntBASIC1.92□□□□□ -2.1
USP28Q96RU2 RNU6-318P-201ENST00000384283 103 ntBASIC1.92□□□□□ -2.1
USP28Q96RU2 MIR518A2-201ENST00000384966 87 ntBASIC1.92□□□□□ -2.1
USP28Q96RU2 U8.13-201ENST00000390842 128 ntBASIC1.92□□□□□ -2.1
USP28Q96RU2 RNU1-139P-201ENST00000391307 165 ntBASIC1.92□□□□□ -2.1
USP28Q96RU2 AC004386.2-201ENST00000441858 148 ntBASIC1.92□□□□□ -2.1
USP28Q96RU2 RPL23AP63-201ENST00000498752 471 ntBASIC1.92□□□□□ -2.1
USP28Q96RU2 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.92□□□□□ -2.1
USP28Q96RU2 AC093023.1-201ENST00000547375 507 ntBASIC1.92□□□□□ -2.1
USP28Q96RU2 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.92□□□□□ -2.1
USP28Q96RU2 AC083806.3-201ENST00000614016 455 ntBASIC1.92□□□□□ -2.1
USP28Q96RU2 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.92□□□□□ -2.1
USP28Q96RU2 U2.1-201ENST00000618978 145 ntBASIC1.92□□□□□ -2.1
USP28Q96RU2 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
USP28Q96RU2 BX322639.1-202ENST00000423987 2213 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 RNU6-1301P-201ENST00000362724 104 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 RNU6-727P-201ENST00000363592 107 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 RNU6-450P-201ENST00000364654 107 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 SNORA33.2-201ENST00000365413 134 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.91□□□□□ -2.1
USP28Q96RU2 RNU6-281P-201ENST00000384212 103 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 AC114482.1-201ENST00000418010 247 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.91□□□□□ -2.1
USP28Q96RU2 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.91□□□□□ -2.1
USP28Q96RU2 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.91□□□□□ -2.1
USP28Q96RU2 RPL23AP94-201ENST00000512518 302 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 RNU6-1114P-201ENST00000516022 107 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 SCARNA15.1-201ENST00000516384 125 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 SNORA25.14-201ENST00000516481 132 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 RNU7-4P-201ENST00000516961 62 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 RNU6-667P-201ENST00000517186 102 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
USP28Q96RU2 AC018630.3-201ENST00000542637 96 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.91□□□□□ -2.1
USP28Q96RU2 MZT1P2-201ENST00000604387 248 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 MIR8081-201ENST00000611533 95 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.91□□□□□ -2.1
USP28Q96RU2 AL357075.2-201ENST00000614906 189 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 AC005562.2-201ENST00000618264 111 ntBASIC1.91□□□□□ -2.1
USP28Q96RU2 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.9□□□□□ -2.1
USP28Q96RU2 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.9□□□□□ -2.1
USP28Q96RU2 RNU6-234P-201ENST00000365229 104 ntBASIC1.9□□□□□ -2.11
USP28Q96RU2 MIR583-201ENST00000384846 75 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms