Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RNU1-117P-201ENST00000517041 158 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 AC087854.1-201ENST00000519706 414 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 AF235103.2-201ENST00000525753 346 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 AC036111.3-201ENST00000526389 112 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 AP003072.2-201ENST00000527756 676 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.01□□□□□ -2.41
CCDC42Q96M95 AL133173.2-201ENST00000614270 90 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 AC022709.1-201ENST00000615967 87 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.01□□□□□ -2.41
CCDC42Q96M95 RMST_2.1-201ENST00000617263 136 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 MIR6079-201ENST00000635807 62 ntBASIC0.01□□□□□ -2.41
CCDC42Q96M95 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0□□□□□ -2.41
CCDC42Q96M95 RNU6-74P-201ENST00000384235 107 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 RNU6-1106P-201ENST00000390845 107 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 CALM2P3-201ENST00000400429 449 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 RNU6-994P-201ENST00000410507 111 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0□□□□□ -2.41
CCDC42Q96M95 MTCO2P34-201ENST00000421994 607 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0□□□□□ -2.41
CCDC42Q96M95 NDUFB4P10-201ENST00000452541 359 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 MTCO2P18-201ENST00000457151 658 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC0□□□□□ -2.41
CCDC42Q96M95 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0□□□□□ -2.41
CCDC42Q96M95 Y_RNA.676-201ENST00000516393 96 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 Vault.3-201ENST00000516676 95 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0□□□□□ -2.41
CCDC42Q96M95 FRG2DP-202ENST00000566967 323 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 RNU6-85P-201ENST00000605989 107 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 RNU4-5P-201ENST00000607255 135 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 AC027807.2-201ENST00000616099 408 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 AC008133.2-201ENST00000624540 351 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 AC006927.3-201ENST00000638789 384 ntBASIC0□□□□□ -2.41
CCDC42Q96M95 MTND4P4-201ENST00000439033 1366 ntBASIC-0.01□□□□□ -2.41
CCDC42Q96M95 MIRLET7C-201ENST00000362160 84 ntBASIC-0.01□□□□□ -2.41
CCDC42Q96M95 Y_RNA.354-201ENST00000365448 111 ntBASIC-0.01□□□□□ -2.41
CCDC42Q96M95 RNU4-45P-201ENST00000365469 141 ntBASIC-0.01□□□□□ -2.41
CCDC42Q96M95 Y_RNA.399-201ENST00000383955 105 ntBASIC-0.01□□□□□ -2.41
CCDC42Q96M95 MIR1185-2-201ENST00000408687 86 ntBASIC-0.01□□□□□ -2.41
CCDC42Q96M95 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC-0.01□□□□□ -2.41
CCDC42Q96M95 AL512286.1-201ENST00000439244 400 ntBASIC-0.01□□□□□ -2.41
CCDC42Q96M95 USP9YP12-201ENST00000450481 570 ntBASIC-0.01□□□□□ -2.41
CCDC42Q96M95 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC-0.01□□□□□ -2.41
CCDC42Q96M95 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC-0.01□□□□□ -2.41
CCDC42Q96M95 LARP7P1-201ENST00000605576 316 ntBASIC-0.01□□□□□ -2.41
CCDC42Q96M95 SNORD11B-201ENST00000607707 90 ntBASIC-0.01□□□□□ -2.41
CCDC42Q96M95 RNU6-1266P-201ENST00000362794 105 ntBASIC-0.02□□□□□ -2.41
CCDC42Q96M95 Y_RNA.336-201ENST00000365307 109 ntBASIC-0.02□□□□□ -2.41
CCDC42Q96M95 MIR1287-201ENST00000408492 90 ntBASIC-0.02□□□□□ -2.41
CCDC42Q96M95 GPR143P-201ENST00000434155 205 ntBASIC-0.02□□□□□ -2.41
CCDC42Q96M95 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC-0.02□□□□□ -2.41
CCDC42Q96M95 SNRPGP12-201ENST00000449481 213 ntBASIC-0.02□□□□□ -2.41
CCDC42Q96M95 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC-0.02□□□□□ -2.41
CCDC42Q96M95 SCARNA18-201ENST00000459004 134 ntBASIC-0.02□□□□□ -2.41
CCDC42Q96M95 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC-0.02□□□□□ -2.41
CCDC42Q96M95 RNU2-46P-201ENST00000517038 113 ntBASIC-0.02□□□□□ -2.41
CCDC42Q96M95 MTND2P32-201ENST00000521584 1038 ntBASIC-0.02□□□□□ -2.41
CCDC42Q96M95 MIR4703-201ENST00000577728 79 ntBASIC-0.02□□□□□ -2.41
CCDC42Q96M95 AL157392.4-201ENST00000609756 345 ntBASIC-0.02□□□□□ -2.41
CCDC42Q96M95 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC-0.03□□□□□ -2.41
CCDC42Q96M95 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC-0.03□□□□□ -2.41
CCDC42Q96M95 SNORD44.1-201ENST00000363202 61 ntBASIC-0.03□□□□□ -2.41
CCDC42Q96M95 RNU5E-5P-201ENST00000365379 116 ntBASIC-0.03□□□□□ -2.41
CCDC42Q96M95 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC-0.03□□□□□ -2.41
CCDC42Q96M95 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC-0.03□□□□□ -2.41
CCDC42Q96M95 snoU109.3-201ENST00000459477 145 ntBASIC-0.03□□□□□ -2.41
CCDC42Q96M95 GMFBP1-201ENST00000467831 427 ntBASIC-0.03□□□□□ -2.41
CCDC42Q96M95 RPL39P5-202ENST00000512505 151 ntBASIC-0.03□□□□□ -2.41
CCDC42Q96M95 RNU2-56P-201ENST00000516826 190 ntBASIC-0.03□□□□□ -2.41
CCDC42Q96M95 AP001372.4-201ENST00000524889 472 ntBASIC-0.03□□□□□ -2.41
CCDC42Q96M95 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC-0.03□□□□□ -2.41
CCDC42Q96M95 MIR4667-201ENST00000578933 66 ntBASIC-0.03□□□□□ -2.41
CCDC42Q96M95 SNORA4-201ENST00000584302 138 ntBASIC-0.03□□□□□ -2.41
CCDC42Q96M95 MIR4438-201ENST00000585271 93 ntBASIC-0.03□□□□□ -2.41
CCDC42Q96M95 MIR6515-201ENST00000619843 57 ntBASIC-0.03□□□□□ -2.41
CCDC42Q96M95 AC005592.1-201ENST00000566527 1640 ntBASIC-0.03□□□□□ -2.41
CCDC42Q96M95 RNA5SP62-201ENST00000363457 110 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 Y_RNA.476-201ENST00000384347 108 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 MIR562-201ENST00000384894 95 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 RNA5SP482-201ENST00000391269 118 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC-0.04□□□□□ -2.42
CCDC42Q96M95 MRPS10P1-201ENST00000448483 130 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 RPS29P15-201ENST00000458329 171 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 AC010469.2-201ENST00000496412 480 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 RN7SKP164-201ENST00000516138 266 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 RNU6-58P-201ENST00000517143 103 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 AC027288.2-201ENST00000553028 243 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 MIR4514-201ENST00000581410 57 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 RAC1P9-201ENST00000604990 392 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 AC007742.2-201ENST00000618226 398 ntBASIC-0.04□□□□□ -2.42
CCDC42Q96M95 MTND4P9-201ENST00000507819 1346 ntBASIC-0.05□□□□□ -2.42
CCDC42Q96M95 SNORA25.3-201ENST00000363205 127 ntBASIC-0.05□□□□□ -2.42
CCDC42Q96M95 Y_RNA.116-201ENST00000363292 103 ntBASIC-0.05□□□□□ -2.42
CCDC42Q96M95 RNU6-1097P-201ENST00000363586 107 ntBASIC-0.05□□□□□ -2.42
CCDC42Q96M95 RNU6-137P-201ENST00000363680 108 ntBASIC-0.05□□□□□ -2.42
CCDC42Q96M95 Y_RNA.226-201ENST00000364337 114 ntBASIC-0.05□□□□□ -2.42
CCDC42Q96M95 RNU4-67P-201ENST00000364569 141 ntBASIC-0.05□□□□□ -2.42
CCDC42Q96M95 RNU6-1297P-201ENST00000384415 104 ntBASIC-0.05□□□□□ -2.42
CCDC42Q96M95 MIR573-201ENST00000384964 99 ntBASIC-0.05□□□□□ -2.42
CCDC42Q96M95 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC-0.05□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms