Protein–RNA interactions for Protein: Q6ZNE9

RUFY4, RUN and FYVE domain-containing protein 4, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUFY4Q6ZNE9 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
RUFY4Q6ZNE9 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.37□□□□□ -1.87
RUFY4Q6ZNE9 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
RUFY4Q6ZNE9 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 AC073325.2-201ENST00000339545 159 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 SNORD114-7-201ENST00000362520 77 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 SNORD115-30-201ENST00000364117 82 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 RNU6-1305P-201ENST00000364353 104 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 Y_RNA.361-201ENST00000365515 120 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 RNU6-662P-201ENST00000384253 104 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 RNU6-886P-201ENST00000384319 105 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 RNU6-1274P-201ENST00000384557 107 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 MIR548B-201ENST00000385247 97 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 RPS29P12-201ENST00000460178 152 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 AC024405.2-202ENST00000532731 184 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 AC009127.3-201ENST00000570531 403 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 AC105245.1-201ENST00000581934 244 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 AC072026.1-201ENST00000605023 201 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 AC005828.6-201ENST00000606610 232 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 AC069294.1-201ENST00000608397 350 ntBASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
RUFY4Q6ZNE9 RNU6-1020P-201ENST00000363684 107 ntBASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 RNU6-324P-201ENST00000363957 106 ntBASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 RNU6-234P-201ENST00000365229 104 ntBASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 SNORA48.8-201ENST00000391324 134 ntBASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 MIR1283-1-201ENST00000408494 87 ntBASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 MIR1185-2-201ENST00000408687 86 ntBASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 RNU6-1328P-201ENST00000410938 106 ntBASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 RNU6-651P-201ENST00000411040 105 ntBASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 HMGN2P9-201ENST00000476875 229 ntBASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 AL078604.3-201ENST00000615580 211 ntBASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 MIR5739-201ENST00000619803 80 ntBASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
RUFY4Q6ZNE9 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 RNU6-1272P-201ENST00000362776 107 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 Y_RNA.304-201ENST00000365011 112 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 AL031003.1-201ENST00000404229 172 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 AL031121.1-201ENST00000406553 254 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 RN7SKP123-201ENST00000410732 291 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 AL135938.1-201ENST00000443141 297 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 CYP2C59P-201ENST00000457790 269 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 RNU7-14P-201ENST00000459331 62 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 TRAPPC2P7-201ENST00000509650 231 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 AC091826.1-201ENST00000514065 313 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 SNORA70.12-201ENST00000516084 153 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 AC109329.2-201ENST00000519658 482 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 MIR3145-201ENST00000580727 82 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 MIR4672-201ENST00000583126 81 ntBASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.34□□□□□ -1.87
RUFY4Q6ZNE9 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 Y_RNA.262-201ENST00000364641 102 ntBASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 SNORD31B-201ENST00000364977 69 ntBASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 Y_RNA.435-201ENST00000384095 112 ntBASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 MIR95-201ENST00000385072 81 ntBASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 RN7SKP43-201ENST00000516173 320 ntBASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 MIR5692C2-201ENST00000577959 77 ntBASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 MIR4753-201ENST00000585119 83 ntBASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 AL365434.2-201ENST00000607979 234 ntBASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 snoU18.1-201ENST00000629629 71 ntBASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 U6.115-201ENST00000636045 103 ntBASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
RUFY4Q6ZNE9 AL159152.1-201ENST00000635019 2587 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 RNU6-944P-201ENST00000364023 107 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 RNU6-211P-201ENST00000384047 107 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 Y_RNA.464-201ENST00000384282 110 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 TRIAP1P1-201ENST00000427062 225 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 RN7SKP132-201ENST00000516001 208 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 AC136628.3-201ENST00000521868 290 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 GTF3AP2-201ENST00000557014 266 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 MIR3199-1-201ENST00000582434 88 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 ELOCP29-201ENST00000588193 334 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 AC007318.2-201ENST00000620999 243 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.32□□□□□ -1.88
RUFY4Q6ZNE9 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 205.5 ms