Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 Y_RNA.581-201ENST00000391017 97 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 RNU6-847P-201ENST00000411115 108 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS53Q5VIR6 AC005002.2-201ENST00000438228 269 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS53Q5VIR6 AC145146.1-201ENST00000496370 254 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.78□□□□□ -1.96
VPS53Q5VIR6 AC074133.1-201ENST00000515696 183 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 SNORA40.9-201ENST00000515895 93 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 RNA5SP281-201ENST00000516504 135 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 RNU6-570P-201ENST00000517051 105 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 MIR4423-201ENST00000580922 80 ntBASIC2.78□□□□□ -1.96
VPS53Q5VIR6 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.78□□□□□ -1.96
VPS53Q5VIR6 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
VPS53Q5VIR6 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
VPS53Q5VIR6 MTND5P6-201ENST00000422338 1798 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 MTND5P35-201ENST00000557537 1720 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.77□□□□□ -1.97
VPS53Q5VIR6 MIR335-201ENST00000362173 94 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 Y_RNA.14-201ENST00000362415 103 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 snoU2_19.2-201ENST00000363024 80 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 Y_RNA.447-201ENST00000384184 113 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 SNORA46.1-201ENST00000391069 153 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 AC007064.1-201ENST00000412238 351 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS53Q5VIR6 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS53Q5VIR6 AC010095.1-201ENST00000443543 144 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 AC098869.1-201ENST00000481627 292 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 AK6P2-201ENST00000549020 471 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 AC233702.2-202ENST00000562547 291 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.77□□□□□ -1.97
VPS53Q5VIR6 AL713866.2-201ENST00000603579 219 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 AP001282.2-201ENST00000616149 309 ntBASIC2.77□□□□□ -1.97
VPS53Q5VIR6 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.77□□□□□ -1.97
VPS53Q5VIR6 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS53Q5VIR6 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS53Q5VIR6 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS53Q5VIR6 Y_RNA.230-201ENST00000364348 109 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 RNU6-1318P-201ENST00000365389 103 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 RNU6-937P-201ENST00000384325 106 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 MIR215-201ENST00000384858 110 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 MIR29B2-201ENST00000385055 81 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 MIR95-201ENST00000385072 81 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 RNU2-38P-201ENST00000410856 79 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 RNU5A-5P-201ENST00000411054 116 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 AL390729.2-201ENST00000416137 156 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS53Q5VIR6 RPL39P38-201ENST00000467018 153 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 AC091179.3-201ENST00000474761 144 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 SNORA31.11-201ENST00000516528 139 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 RNU1-104P-201ENST00000517280 175 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS53Q5VIR6 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.76□□□□□ -1.97
VPS53Q5VIR6 RPL17P51-201ENST00000605218 238 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 AC005562.2-201ENST00000618264 111 ntBASIC2.76□□□□□ -1.97
VPS53Q5VIR6 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.76□□□□□ -1.97
VPS53Q5VIR6 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
VPS53Q5VIR6 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS53Q5VIR6 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS53Q5VIR6 snoU2_19.1-201ENST00000362361 80 ntBASIC2.75□□□□□ -1.97
VPS53Q5VIR6 SNORD113-8-201ENST00000363497 74 ntBASIC2.75□□□□□ -1.97
VPS53Q5VIR6 RNU6-379P-201ENST00000363813 104 ntBASIC2.75□□□□□ -1.97
VPS53Q5VIR6 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS53Q5VIR6 RNU6-496P-201ENST00000516145 99 ntBASIC2.75□□□□□ -1.97
VPS53Q5VIR6 RNA5SP24-201ENST00000516478 95 ntBASIC2.75□□□□□ -1.97
VPS53Q5VIR6 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.75□□□□□ -1.97
VPS53Q5VIR6 MIR5194-201ENST00000582634 120 ntBASIC2.75□□□□□ -1.97
VPS53Q5VIR6 MIR5007-201ENST00000583098 95 ntBASIC2.75□□□□□ -1.97
VPS53Q5VIR6 MZT1P2-201ENST00000604387 248 ntBASIC2.75□□□□□ -1.97
VPS53Q5VIR6 AL670379.2-201ENST00000604983 252 ntBASIC2.75□□□□□ -1.97
VPS53Q5VIR6 AL357075.2-201ENST00000614906 189 ntBASIC2.75□□□□□ -1.97
VPS53Q5VIR6 TCL6_2.1-201ENST00000615162 119 ntBASIC2.75□□□□□ -1.97
VPS53Q5VIR6 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
VPS53Q5VIR6 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VPS53Q5VIR6 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS53Q5VIR6 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS53Q5VIR6 RNU1-52P-201ENST00000384190 164 ntBASIC2.74□□□□□ -1.97
VPS53Q5VIR6 Y_RNA.478-201ENST00000384358 107 ntBASIC2.74□□□□□ -1.97
VPS53Q5VIR6 MIR549A-201ENST00000385268 96 ntBASIC2.74□□□□□ -1.97
VPS53Q5VIR6 RNU2-20P-201ENST00000410425 191 ntBASIC2.74□□□□□ -1.97
VPS53Q5VIR6 RNU4-53P-201ENST00000410828 140 ntBASIC2.74□□□□□ -1.97
VPS53Q5VIR6 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS53Q5VIR6 IFNA11P-201ENST00000446352 526 ntBASIC2.74□□□□□ -1.97
VPS53Q5VIR6 AL139109.1-201ENST00000455491 297 ntBASIC2.74□□□□□ -1.97
VPS53Q5VIR6 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS53Q5VIR6 RNU6-344P-201ENST00000516635 111 ntBASIC2.74□□□□□ -1.97
VPS53Q5VIR6 SNORA48.11-201ENST00000517015 89 ntBASIC2.74□□□□□ -1.97
VPS53Q5VIR6 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.74□□□□□ -1.97
VPS53Q5VIR6 SNORD113-5-201ENST00000607261 78 ntBASIC2.74□□□□□ -1.97
VPS53Q5VIR6 SDR42E1P4-201ENST00000620894 481 ntBASIC2.74□□□□□ -1.97
VPS53Q5VIR6 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.74□□□□□ -1.97
VPS53Q5VIR6 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.74□□□□□ -1.97
VPS53Q5VIR6 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS53Q5VIR6 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
VPS53Q5VIR6 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.73□□□□□ -1.97
VPS53Q5VIR6 RNU6-626P-201ENST00000363354 107 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 RNA5SP393-201ENST00000363423 117 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 RNU6-961P-201ENST00000363893 105 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 SNORD32B-201ENST00000364460 84 ntBASIC2.73□□□□□ -1.97
VPS53Q5VIR6 Y_RNA.570-201ENST00000384750 101 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms