Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MIR4698-201ENST00000577795 80 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 MIR4742-201ENST00000581069 85 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 AC010620.1-201ENST00000601088 1102 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 FAM71BP1-201ENST00000604431 523 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 RNU6-89P-201ENST00000606519 100 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 AC004492.1-201ENST00000607036 742 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 AL133215.3-201ENST00000609801 448 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.83□□□□□ -2.28
FOXA1P55317 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.83□□□□□ -2.28
FOXA1P55317 AC124864.2-201ENST00000624736 186 ntBASIC0.83□□□□□ -2.28
FOXA1P55317 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.82□□□□□ -2.28
FOXA1P55317 SNORD113-7-201ENST00000363762 77 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 RNY1-201ENST00000364228 113 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 Y_RNA.466-201ENST00000384294 113 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 MIR532-201ENST00000385025 91 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.82□□□□□ -2.28
FOXA1P55317 RNA5SP467-201ENST00000391274 118 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 MIR1253-201ENST00000408273 105 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 MIR548J-201ENST00000408833 112 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 AC016909.1-201ENST00000415916 166 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 EIF1P1-201ENST00000421436 341 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 ERLEC1P1-201ENST00000433806 578 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.82□□□□□ -2.28
FOXA1P55317 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.82□□□□□ -2.28
FOXA1P55317 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.82□□□□□ -2.28
FOXA1P55317 RNU7-187P-201ENST00000458985 68 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 RNU7-34P-201ENST00000459394 64 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 RPL39P28-201ENST00000465655 155 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 RPL30P7-201ENST00000479312 323 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 RPS23P4-201ENST00000487908 423 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 Y_RNA.693-201ENST00000516641 110 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 RNU6-113P-201ENST00000516653 101 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 RNU1-117P-201ENST00000517041 158 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.82□□□□□ -2.28
FOXA1P55317 AL442163.3-201ENST00000554110 156 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 MIR3973-201ENST00000579824 107 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.82□□□□□ -2.28
FOXA1P55317 AL365434.2-201ENST00000607979 234 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 Z99129.1-201ENST00000612510 255 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 AC137590.2-201ENST00000619709 240 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 AL359880.1-201ENST00000621879 266 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 AL078596.1-201ENST00000624856 447 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 AC008873.1-201ENST00000625051 138 ntBASIC0.82□□□□□ -2.28
FOXA1P55317 SNORD50.1-201ENST00000362987 71 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 RNU6-254P-201ENST00000363377 107 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 Y_RNA.354-201ENST00000365448 111 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 Y_RNA.372-201ENST00000365599 102 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 MIR515-2-201ENST00000384883 83 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 MIR515-1-201ENST00000384884 83 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
FOXA1P55317 RNA5SP109-201ENST00000391010 116 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 RNA5SP323-201ENST00000391094 133 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 MIR320B2-201ENST00000408479 138 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.81□□□□□ -2.28
FOXA1P55317 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC0.81□□□□□ -2.28
FOXA1P55317 SNX2P2-201ENST00000424553 323 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 DYNLT3P2-201ENST00000442517 295 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC0.81□□□□□ -2.28
FOXA1P55317 HMGN1P12-201ENST00000499125 195 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 RNU6-344P-201ENST00000516635 111 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 AL512360.1-201ENST00000555346 234 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 CYP3A52P-201ENST00000563326 91 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 AC097065.2-201ENST00000608159 533 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 MIR6788-201ENST00000618842 66 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 snoZ196.1-201ENST00000625269 89 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 AC068137.3-201ENST00000639191 341 ntBASIC0.81□□□□□ -2.28
FOXA1P55317 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
FOXA1P55317 Y_RNA.151-201ENST00000363566 112 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 SNORD114-2-201ENST00000363953 78 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 RNU6-790P-201ENST00000384479 105 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 RNU6-780P-201ENST00000391030 104 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 AL590002.1-201ENST00000406554 418 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 RNA5SP504-201ENST00000410676 117 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.8□□□□□ -2.28
FOXA1P55317 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.8□□□□□ -2.28
FOXA1P55317 SEPT14P3-201ENST00000439401 183 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.8□□□□□ -2.28
FOXA1P55317 AL353572.1-201ENST00000442490 417 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 AL606517.2-201ENST00000442855 241 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 AL732372.2-207ENST00000445840 183 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 RPS4XP11-201ENST00000446897 772 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 SEPT14P2-201ENST00000453405 183 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 AC079354.2-201ENST00000453523 154 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 AC103851.1-201ENST00000506833 274 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 SEPT14P4-201ENST00000513445 186 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.8□□□□□ -2.28
FOXA1P55317 RNU6-351P-201ENST00000516097 100 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 AC025647.1-201ENST00000517879 253 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 MTND1P5-201ENST00000517906 940 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 AC024995.1-201ENST00000523014 93 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 FO082796.1-201ENST00000523795 183 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 RAB11AP2-201ENST00000545905 639 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 AL512310.8-201ENST00000550183 120 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 AC010525.2-201ENST00000590920 195 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.8□□□□□ -2.28
FOXA1P55317 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 AC040896.1-201ENST00000613819 479 ntBASIC0.8□□□□□ -2.28
FOXA1P55317 AC012676.2-201ENST00000619258 186 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms