Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC100812.1-201ENST00000607622 580 ntBASIC2.27□□□□□ -2.05
CTCFP49711 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.27□□□□□ -2.05
CTCFP49711 AL162373.1-201ENST00000620433 407 ntBASIC2.27□□□□□ -2.05
CTCFP49711 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.27□□□□□ -2.05
CTCFP49711 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
CTCFP49711 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CTCFP49711 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
CTCFP49711 MIR340-201ENST00000362125 95 ntBASIC2.26□□□□□ -2.05
CTCFP49711 Y_RNA.67-201ENST00000362870 100 ntBASIC2.26□□□□□ -2.05
CTCFP49711 Y_RNA.99-201ENST00000363138 105 ntBASIC2.26□□□□□ -2.05
CTCFP49711 RNU4-73P-201ENST00000363164 141 ntBASIC2.26□□□□□ -2.05
CTCFP49711 RNU6-1164P-201ENST00000364428 107 ntBASIC2.26□□□□□ -2.05
CTCFP49711 Y_RNA.259-201ENST00000364619 101 ntBASIC2.26□□□□□ -2.05
CTCFP49711 RNU5E-4P-201ENST00000364931 120 ntBASIC2.26□□□□□ -2.05
CTCFP49711 SNORD31B-201ENST00000364977 69 ntBASIC2.26□□□□□ -2.05
CTCFP49711 RNA5SP138-201ENST00000365098 114 ntBASIC2.26□□□□□ -2.05
CTCFP49711 RNU6-159P-201ENST00000391080 106 ntBASIC2.26□□□□□ -2.05
CTCFP49711 AL512604.1-201ENST00000404812 257 ntBASIC2.26□□□□□ -2.05
CTCFP49711 MTND3P23-201ENST00000431980 347 ntBASIC2.26□□□□□ -2.05
CTCFP49711 MTND2P29-201ENST00000438595 412 ntBASIC2.26□□□□□ -2.05
CTCFP49711 AC009237.7-201ENST00000447357 229 ntBASIC2.26□□□□□ -2.05
CTCFP49711 RPL30P15-201ENST00000457129 321 ntBASIC2.26□□□□□ -2.05
CTCFP49711 AC016925.1-201ENST00000458303 298 ntBASIC2.26□□□□□ -2.05
CTCFP49711 RNU1-123P-201ENST00000458950 160 ntBASIC2.26□□□□□ -2.05
CTCFP49711 Y_RNA.653-201ENST00000459091 95 ntBASIC2.26□□□□□ -2.05
CTCFP49711 AP000870.1-201ENST00000472927 406 ntBASIC2.26□□□□□ -2.05
CTCFP49711 HMGN1P7-201ENST00000491722 313 ntBASIC2.26□□□□□ -2.05
CTCFP49711 RNU6-1198P-201ENST00000516904 67 ntBASIC2.26□□□□□ -2.05
CTCFP49711 ANP32BP3-201ENST00000559213 706 ntBASIC2.26□□□□□ -2.05
CTCFP49711 MIR5006-201ENST00000583027 110 ntBASIC2.26□□□□□ -2.05
CTCFP49711 SNRPGP20-201ENST00000604477 205 ntBASIC2.26□□□□□ -2.05
CTCFP49711 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.26□□□□□ -2.05
CTCFP49711 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.26□□□□□ -2.05
CTCFP49711 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
CTCFP49711 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.25□□□□□ -2.05
CTCFP49711 SNORD114-22-201ENST00000365423 72 ntBASIC2.25□□□□□ -2.05
CTCFP49711 RNU6-245P-201ENST00000384020 107 ntBASIC2.25□□□□□ -2.05
CTCFP49711 MIR518A2-201ENST00000384966 87 ntBASIC2.25□□□□□ -2.05
CTCFP49711 MT-TD-201ENST00000387419 68 ntBASIC2.25□□□□□ -2.05
CTCFP49711 AL033519.2-201ENST00000403958 392 ntBASIC2.25□□□□□ -2.05
CTCFP49711 Y_RNA.604-201ENST00000410574 102 ntBASIC2.25□□□□□ -2.05
CTCFP49711 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CTCFP49711 AL445305.1-201ENST00000432577 575 ntBASIC2.25□□□□□ -2.05
CTCFP49711 AC009474.2-201ENST00000451383 136 ntBASIC2.25□□□□□ -2.05
CTCFP49711 SNORD19B-201ENST00000459623 84 ntBASIC2.25□□□□□ -2.05
CTCFP49711 RPL17P19-201ENST00000489069 552 ntBASIC2.25□□□□□ -2.05
CTCFP49711 Y_RNA.706-201ENST00000516933 99 ntBASIC2.25□□□□□ -2.05
CTCFP49711 RNU6-250P-201ENST00000516958 103 ntBASIC2.25□□□□□ -2.05
CTCFP49711 UBL5P4-201ENST00000562584 236 ntBASIC2.25□□□□□ -2.05
CTCFP49711 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.25□□□□□ -2.05
CTCFP49711 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.25□□□□□ -2.05
CTCFP49711 MIR8081-201ENST00000611533 95 ntBASIC2.25□□□□□ -2.05
CTCFP49711 SDR42E1P4-201ENST00000620894 481 ntBASIC2.25□□□□□ -2.05
CTCFP49711 RNU6-222P-201ENST00000362438 107 ntBASIC2.24□□□□□ -2.05
CTCFP49711 Y_RNA.58-201ENST00000362807 102 ntBASIC2.24□□□□□ -2.05
CTCFP49711 Y_RNA.106-201ENST00000363189 100 ntBASIC2.24□□□□□ -2.05
CTCFP49711 Y_RNA.154-201ENST00000363624 102 ntBASIC2.24□□□□□ -2.05
CTCFP49711 RNU6-873P-201ENST00000363833 107 ntBASIC2.24□□□□□ -2.05
CTCFP49711 RNY3P1-201ENST00000365085 102 ntBASIC2.24□□□□□ -2.05
CTCFP49711 RNY3-201ENST00000365484 102 ntBASIC2.24□□□□□ -2.05
CTCFP49711 MIR10B-201ENST00000385011 110 ntBASIC2.24□□□□□ -2.05
CTCFP49711 RNU6-700P-201ENST00000391043 107 ntBASIC2.24□□□□□ -2.05
CTCFP49711 MIR190B-201ENST00000401119 79 ntBASIC2.24□□□□□ -2.05
CTCFP49711 AC123900.1-201ENST00000420390 96 ntBASIC2.24□□□□□ -2.05
CTCFP49711 MTCYBP10-201ENST00000424905 650 ntBASIC2.24□□□□□ -2.05
CTCFP49711 RPL23AP50-201ENST00000434149 455 ntBASIC2.24□□□□□ -2.05
CTCFP49711 RNU7-152P-201ENST00000458982 64 ntBASIC2.24□□□□□ -2.05
CTCFP49711 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.24□□□□□ -2.05
CTCFP49711 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
CTCFP49711 AC005034.5-201ENST00000604219 466 ntBASIC2.24□□□□□ -2.05
CTCFP49711 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.24□□□□□ -2.05
CTCFP49711 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
CTCFP49711 RNU6-545P-201ENST00000362681 104 ntBASIC2.23□□□□□ -2.05
CTCFP49711 SNORD115-3-201ENST00000363100 82 ntBASIC2.23□□□□□ -2.05
CTCFP49711 RNU6-541P-201ENST00000384709 110 ntBASIC2.23□□□□□ -2.05
CTCFP49711 RNU1-139P-201ENST00000391307 165 ntBASIC2.23□□□□□ -2.05
CTCFP49711 HMGN2P19-201ENST00000425149 265 ntBASIC2.23□□□□□ -2.05
CTCFP49711 AC003989.2-201ENST00000440224 169 ntBASIC2.23□□□□□ -2.05
CTCFP49711 AC022493.2-201ENST00000506122 481 ntBASIC2.23□□□□□ -2.05
CTCFP49711 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.23□□□□□ -2.05
CTCFP49711 RNA5SP364-201ENST00000516938 78 ntBASIC2.23□□□□□ -2.05
CTCFP49711 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.23□□□□□ -2.05
CTCFP49711 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.23□□□□□ -2.05
CTCFP49711 AC004584.2-201ENST00000570407 410 ntBASIC2.23□□□□□ -2.05
CTCFP49711 MIR4285-201ENST00000581001 85 ntBASIC2.23□□□□□ -2.05
CTCFP49711 MIR4795-201ENST00000584182 89 ntBASIC2.23□□□□□ -2.05
CTCFP49711 MIR5002-201ENST00000584713 97 ntBASIC2.23□□□□□ -2.05
CTCFP49711 AL359697.1-201ENST00000624879 587 ntBASIC2.23□□□□□ -2.05
CTCFP49711 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.23□□□□□ -2.05
CTCFP49711 RNU6-99P-201ENST00000364721 107 ntBASIC2.22□□□□□ -2.05
CTCFP49711 RNU6-438P-201ENST00000365561 103 ntBASIC2.22□□□□□ -2.05
CTCFP49711 SNORA67.2-201ENST00000384300 149 ntBASIC2.22□□□□□ -2.05
CTCFP49711 RNU6-1026P-201ENST00000384465 108 ntBASIC2.22□□□□□ -2.05
CTCFP49711 RNA5SP465-201ENST00000391195 109 ntBASIC2.22□□□□□ -2.05
CTCFP49711 MIR320B2-201ENST00000408479 138 ntBASIC2.22□□□□□ -2.05
CTCFP49711 MIR1283-2-201ENST00000408621 87 ntBASIC2.22□□□□□ -2.05
CTCFP49711 AL158823.1-201ENST00000418441 478 ntBASIC2.22□□□□□ -2.05
CTCFP49711 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.22□□□□□ -2.05
CTCFP49711 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.22□□□□□ -2.05
CTCFP49711 AF228730.4-201ENST00000421457 183 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms