Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 AC005534.2-201ENST00000431047 433 ntBASIC-0.25□□□□□ -2.45
SDC4P31431 MRPS10P2-201ENST00000431226 381 ntBASIC-0.25□□□□□ -2.45
SDC4P31431 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC-0.25□□□□□ -2.45
SDC4P31431 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC-0.25□□□□□ -2.45
SDC4P31431 ELOCP24-201ENST00000456370 334 ntBASIC-0.25□□□□□ -2.45
SDC4P31431 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-0.25□□□□□ -2.45
SDC4P31431 RNA5SP454-201ENST00000517231 127 ntBASIC-0.25□□□□□ -2.45
SDC4P31431 RNU6-323P-201ENST00000521915 107 ntBASIC-0.25□□□□□ -2.45
SDC4P31431 MTATP6P15-201ENST00000527233 835 ntBASIC-0.25□□□□□ -2.45
SDC4P31431 AL121992.2-201ENST00000606262 256 ntBASIC-0.25□□□□□ -2.45
SDC4P31431 AL589826.1-201ENST00000340697 249 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 Y_RNA.97-201ENST00000363094 102 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 SNORD118-201ENST00000363593 134 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 RNU6-715P-201ENST00000365204 103 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 RNU6-809P-201ENST00000384461 107 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 SNORA2B-201ENST00000384583 137 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 MIR1302-7-201ENST00000408841 72 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC-0.26□□□□□ -2.45
SDC4P31431 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC-0.26□□□□□ -2.45
SDC4P31431 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC-0.26□□□□□ -2.45
SDC4P31431 AC116347.2-201ENST00000514912 523 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 AP003181.2-201ENST00000528941 181 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC-0.26□□□□□ -2.45
SDC4P31431 AC112693.2-201ENST00000556538 232 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 AP001542.1-201ENST00000591314 200 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 AC104695.3-201ENST00000604052 296 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 AP000907.4-201ENST00000604143 237 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 AC126544.2-201ENST00000625174 749 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 AL445984.1-201ENST00000637834 659 ntBASIC-0.26□□□□□ -2.45
SDC4P31431 ZNF204P-201ENST00000416749 2397 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 Y_RNA.100-201ENST00000363141 102 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 RNU6-1097P-201ENST00000363586 107 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 SNORA32.1-201ENST00000364514 115 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 Y_RNA.465-201ENST00000384293 102 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC-0.27□□□□□ -2.45
SDC4P31431 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-0.27□□□□□ -2.45
SDC4P31431 AL139396.1-201ENST00000421137 167 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC-0.27□□□□□ -2.45
SDC4P31431 AC015818.7-201ENST00000428754 109 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 MTATP6P16-201ENST00000434543 526 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 AC087499.7-201ENST00000441958 109 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 snoU13.21-201ENST00000459368 105 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 AC010587.1-201ENST00000505809 469 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 RPL39P5-202ENST00000512505 151 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 RNU6-1178P-201ENST00000516674 107 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 RNA5SP94-201ENST00000516917 108 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 RNU6-1220P-201ENST00000517126 108 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 AC141557.1-201ENST00000540982 400 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC-0.27□□□□□ -2.45
SDC4P31431 Six3os1_7.1-201ENST00000621512 201 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 AL078596.1-201ENST00000624856 447 ntBASIC-0.27□□□□□ -2.45
SDC4P31431 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC-0.28□□□□□ -2.45
SDC4P31431 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC-0.28□□□□□ -2.45
SDC4P31431 RNU6-387P-201ENST00000411331 105 ntBASIC-0.28□□□□□ -2.45
SDC4P31431 RPL22P17-201ENST00000438729 315 ntBASIC-0.28□□□□□ -2.45
SDC4P31431 EEF1A1P39-201ENST00000440791 250 ntBASIC-0.28□□□□□ -2.45
SDC4P31431 MTCO2P6-201ENST00000463134 685 ntBASIC-0.28□□□□□ -2.45
SDC4P31431 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC-0.28□□□□□ -2.45
SDC4P31431 SNORA19.3-201ENST00000516165 130 ntBASIC-0.28□□□□□ -2.45
SDC4P31431 RNU1-117P-201ENST00000517041 158 ntBASIC-0.28□□□□□ -2.45
SDC4P31431 MIR548AO-201ENST00000579992 96 ntBASIC-0.28□□□□□ -2.45
SDC4P31431 RBM11P1-201ENST00000604951 799 ntBASIC-0.28□□□□□ -2.45
SDC4P31431 AC068792.1-201ENST00000621354 417 ntBASIC-0.28□□□□□ -2.45
SDC4P31431 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC-0.28□□□□□ -2.45
SDC4P31431 SNORD115-7-201ENST00000365306 82 ntBASIC-0.29□□□□□ -2.46
SDC4P31431 MIR487A-201ENST00000385009 80 ntBASIC-0.29□□□□□ -2.46
SDC4P31431 SNORA75.6-201ENST00000391318 127 ntBASIC-0.29□□□□□ -2.46
SDC4P31431 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.29□□□□□ -2.46
SDC4P31431 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC-0.29□□□□□ -2.46
SDC4P31431 RPS24P1-201ENST00000438550 371 ntBASIC-0.29□□□□□ -2.46
SDC4P31431 RNU6-58P-201ENST00000517143 103 ntBASIC-0.29□□□□□ -2.46
SDC4P31431 AP001372.4-201ENST00000524889 472 ntBASIC-0.29□□□□□ -2.46
SDC4P31431 AP003049.1-201ENST00000529418 457 ntBASIC-0.29□□□□□ -2.46
SDC4P31431 AC104383.1-201ENST00000530297 370 ntBASIC-0.29□□□□□ -2.46
SDC4P31431 AC023442.1-201ENST00000531247 422 ntBASIC-0.29□□□□□ -2.46
SDC4P31431 MIR3678-201ENST00000578455 94 ntBASIC-0.29□□□□□ -2.46
SDC4P31431 AC080013.3-201ENST00000606839 578 ntBASIC-0.29□□□□□ -2.46
SDC4P31431 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC-0.3□□□□□ -2.46
SDC4P31431 SNORA1B-201ENST00000362535 133 ntBASIC-0.3□□□□□ -2.46
SDC4P31431 RNU6-550P-201ENST00000391057 101 ntBASIC-0.3□□□□□ -2.46
SDC4P31431 PCNPP3-201ENST00000393579 471 ntBASIC-0.3□□□□□ -2.46
SDC4P31431 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.3□□□□□ -2.46
SDC4P31431 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC-0.3□□□□□ -2.46
SDC4P31431 AL392103.1-201ENST00000447000 198 ntBASIC-0.3□□□□□ -2.46
SDC4P31431 HSPE1P23-201ENST00000509838 286 ntBASIC-0.3□□□□□ -2.46
SDC4P31431 SNORA40.12-201ENST00000516329 111 ntBASIC-0.3□□□□□ -2.46
SDC4P31431 RNU11-2P-201ENST00000516898 142 ntBASIC-0.3□□□□□ -2.46
SDC4P31431 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC-0.3□□□□□ -2.46
SDC4P31431 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC-0.3□□□□□ -2.46
SDC4P31431 AC012433.1-201ENST00000588916 398 ntBASIC-0.3□□□□□ -2.46
SDC4P31431 AC008873.1-201ENST00000625051 138 ntBASIC-0.3□□□□□ -2.46
SDC4P31431 RNU6-179P-201ENST00000363350 107 ntBASIC-0.31□□□□□ -2.46
SDC4P31431 Y_RNA.267-201ENST00000364679 109 ntBASIC-0.31□□□□□ -2.46
SDC4P31431 SNORA8.2-201ENST00000384372 139 ntBASIC-0.31□□□□□ -2.46
SDC4P31431 MIR593-201ENST00000384856 100 ntBASIC-0.31□□□□□ -2.46
SDC4P31431 MIR145-201ENST00000384967 88 ntBASIC-0.31□□□□□ -2.46
SDC4P31431 MIR520C-201ENST00000385005 87 ntBASIC-0.31□□□□□ -2.46
SDC4P31431 AC137499.1-201ENST00000427602 88 ntBASIC-0.31□□□□□ -2.46
SDC4P31431 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC-0.31□□□□□ -2.46
SDC4P31431 EXOSC3P1-201ENST00000448649 500 ntBASIC-0.31□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 144.4 ms