Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RN7SKP49-201ENST00000516675 260 ntBASIC2.04□□□□□ -2.08
MSH3P20585 RNU7-193P-201ENST00000516723 65 ntBASIC2.04□□□□□ -2.08
MSH3P20585 RNU6-1137P-201ENST00000517073 99 ntBASIC2.04□□□□□ -2.08
MSH3P20585 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.04□□□□□ -2.08
MSH3P20585 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.04□□□□□ -2.08
MSH3P20585 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.04□□□□□ -2.08
MSH3P20585 AC010999.1-201ENST00000611856 324 ntBASIC2.04□□□□□ -2.08
MSH3P20585 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
MSH3P20585 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
MSH3P20585 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
MSH3P20585 Y_RNA.179-201ENST00000363844 90 ntBASIC2.03□□□□□ -2.08
MSH3P20585 SNORD14.1-201ENST00000365609 90 ntBASIC2.03□□□□□ -2.08
MSH3P20585 SNORA67.2-201ENST00000384300 149 ntBASIC2.03□□□□□ -2.08
MSH3P20585 RPL23AP7-203ENST00000449021 469 ntBASIC2.03□□□□□ -2.08
MSH3P20585 HMGN2P18-201ENST00000450680 270 ntBASIC2.03□□□□□ -2.08
MSH3P20585 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.03□□□□□ -2.08
MSH3P20585 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.03□□□□□ -2.08
MSH3P20585 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.03□□□□□ -2.08
MSH3P20585 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.03□□□□□ -2.08
MSH3P20585 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.03□□□□□ -2.08
MSH3P20585 AC006504.6-201ENST00000590142 199 ntBASIC2.03□□□□□ -2.08
MSH3P20585 MZT1P2-201ENST00000604387 248 ntBASIC2.03□□□□□ -2.08
MSH3P20585 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.03□□□□□ -2.08
MSH3P20585 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.03□□□□□ -2.08
MSH3P20585 AL359851.1-201ENST00000569460 4997 ntBASIC2.02□□□□□ -2.09
MSH3P20585 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
MSH3P20585 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
MSH3P20585 RNA5SP138-201ENST00000365098 114 ntBASIC2.02□□□□□ -2.09
MSH3P20585 Y_RNA.424-201ENST00000384063 103 ntBASIC2.02□□□□□ -2.09
MSH3P20585 RNA5SP504-201ENST00000410676 117 ntBASIC2.02□□□□□ -2.09
MSH3P20585 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.02□□□□□ -2.09
MSH3P20585 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.02□□□□□ -2.09
MSH3P20585 AC007395.1-201ENST00000451333 677 ntBASIC2.02□□□□□ -2.09
MSH3P20585 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.02□□□□□ -2.09
MSH3P20585 RNU7-14P-201ENST00000459331 62 ntBASIC2.02□□□□□ -2.09
MSH3P20585 RPS29P21-201ENST00000496272 170 ntBASIC2.02□□□□□ -2.09
MSH3P20585 AC010469.2-201ENST00000496412 480 ntBASIC2.02□□□□□ -2.09
MSH3P20585 ATP5EP1-201ENST00000510257 156 ntBASIC2.02□□□□□ -2.09
MSH3P20585 Y_RNA.683-201ENST00000516508 93 ntBASIC2.02□□□□□ -2.09
MSH3P20585 RNU6-667P-201ENST00000517186 102 ntBASIC2.02□□□□□ -2.09
MSH3P20585 Y_RNA.721-201ENST00000517207 102 ntBASIC2.02□□□□□ -2.09
MSH3P20585 AC034114.1-201ENST00000520293 285 ntBASIC2.02□□□□□ -2.09
MSH3P20585 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.02□□□□□ -2.09
MSH3P20585 IGKV3-31-201ENST00000523109 329 ntBASIC2.02□□□□□ -2.09
MSH3P20585 AC040926.1-201ENST00000530195 238 ntBASIC2.02□□□□□ -2.09
MSH3P20585 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.02□□□□□ -2.09
MSH3P20585 MIR4448-201ENST00000584360 86 ntBASIC2.02□□□□□ -2.09
MSH3P20585 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.02□□□□□ -2.09
MSH3P20585 Y_RNA.783-201ENST00000613546 102 ntBASIC2.02□□□□□ -2.09
MSH3P20585 DLEU2_2.2-201ENST00000615474 90 ntBASIC2.02□□□□□ -2.09
MSH3P20585 AL162373.1-201ENST00000620433 407 ntBASIC2.02□□□□□ -2.09
MSH3P20585 MTND5P35-201ENST00000557537 1720 ntBASIC2.02□□□□□ -2.09
MSH3P20585 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.02□□□□□ -2.09
MSH3P20585 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
MSH3P20585 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.01□□□□□ -2.09
MSH3P20585 SNORA63C-201ENST00000364578 129 ntBASIC2.01□□□□□ -2.09
MSH3P20585 RNU6-1160P-201ENST00000384546 104 ntBASIC2.01□□□□□ -2.09
MSH3P20585 Y_RNA.526-201ENST00000384572 110 ntBASIC2.01□□□□□ -2.09
MSH3P20585 MIR606-201ENST00000384851 96 ntBASIC2.01□□□□□ -2.09
MSH3P20585 RNU6-823P-201ENST00000391042 103 ntBASIC2.01□□□□□ -2.09
MSH3P20585 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.01□□□□□ -2.09
MSH3P20585 RNA5SP270-201ENST00000411361 118 ntBASIC2.01□□□□□ -2.09
MSH3P20585 EDDM3CP-201ENST00000415977 425 ntBASIC2.01□□□□□ -2.09
MSH3P20585 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC2.01□□□□□ -2.09
MSH3P20585 RNU6-1012P-201ENST00000516606 109 ntBASIC2.01□□□□□ -2.09
MSH3P20585 RNA5SP364-201ENST00000516938 78 ntBASIC2.01□□□□□ -2.09
MSH3P20585 CYCSP23-201ENST00000519781 313 ntBASIC2.01□□□□□ -2.09
MSH3P20585 AC022616.4-201ENST00000522985 181 ntBASIC2.01□□□□□ -2.09
MSH3P20585 NDUFA5P6-201ENST00000542110 379 ntBASIC2.01□□□□□ -2.09
MSH3P20585 RRN3P3-201ENST00000549207 578 ntBASIC2.01□□□□□ -2.09
MSH3P20585 AC002984.1-201ENST00000591692 448 ntBASIC2.01□□□□□ -2.09
MSH3P20585 AL357075.2-201ENST00000614906 189 ntBASIC2.01□□□□□ -2.09
MSH3P20585 U6.92-201ENST00000636464 89 ntBASIC2.01□□□□□ -2.09
MSH3P20585 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.01□□□□□ -2.09
MSH3P20585 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
MSH3P20585 RNU6-727P-201ENST00000363592 107 ntBASIC2□□□□□ -2.09
MSH3P20585 RNU6-743P-201ENST00000364151 106 ntBASIC2□□□□□ -2.09
MSH3P20585 SNORD31B-201ENST00000364977 69 ntBASIC2□□□□□ -2.09
MSH3P20585 Y_RNA.389-201ENST00000383924 113 ntBASIC2□□□□□ -2.09
MSH3P20585 Y_RNA.455-201ENST00000384230 98 ntBASIC2□□□□□ -2.09
MSH3P20585 RNU6-738P-201ENST00000384531 106 ntBASIC2□□□□□ -2.09
MSH3P20585 Y_RNA.527-201ENST00000384573 102 ntBASIC2□□□□□ -2.09
MSH3P20585 AL033519.2-201ENST00000403958 392 ntBASIC2□□□□□ -2.09
MSH3P20585 RNU6-985P-201ENST00000410182 104 ntBASIC2□□□□□ -2.09
MSH3P20585 Y_RNA.595-201ENST00000410403 105 ntBASIC2□□□□□ -2.09
MSH3P20585 SNORD12B-201ENST00000410433 91 ntBASIC2□□□□□ -2.09
MSH3P20585 RNA5SP338-201ENST00000410495 85 ntBASIC2□□□□□ -2.09
MSH3P20585 AL356379.1-201ENST00000414105 126 ntBASIC2□□□□□ -2.09
MSH3P20585 AL445646.1-201ENST00000431784 216 ntBASIC2□□□□□ -2.09
MSH3P20585 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2□□□□□ -2.09
MSH3P20585 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2□□□□□ -2.09
MSH3P20585 PCNPP5-201ENST00000452246 481 ntBASIC2□□□□□ -2.09
MSH3P20585 RN7SL429P-201ENST00000479090 223 ntBASIC2□□□□□ -2.09
MSH3P20585 RN7SL489P-201ENST00000486185 223 ntBASIC2□□□□□ -2.09
MSH3P20585 RN7SL327P-201ENST00000488659 223 ntBASIC2□□□□□ -2.09
MSH3P20585 RNU1-41P-201ENST00000516161 162 ntBASIC2□□□□□ -2.09
MSH3P20585 RNU1-48P-201ENST00000516400 162 ntBASIC2□□□□□ -2.09
MSH3P20585 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2□□□□□ -2.09
MSH3P20585 MIR3126-201ENST00000577443 74 ntBASIC2□□□□□ -2.09
MSH3P20585 RPS29P30-201ENST00000600975 111 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms