Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.43□□□□□ -2.18
SDC1P18827 MTND3P10-201ENST00000450967 341 ntBASIC1.43□□□□□ -2.18
SDC1P18827 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.43□□□□□ -2.18
SDC1P18827 snoU13.15-201ENST00000459407 104 ntBASIC1.43□□□□□ -2.18
SDC1P18827 snoU13.26-201ENST00000459452 105 ntBASIC1.43□□□□□ -2.18
SDC1P18827 MTND4P17-201ENST00000470444 350 ntBASIC1.43□□□□□ -2.18
SDC1P18827 AC023790.1-201ENST00000482174 347 ntBASIC1.43□□□□□ -2.18
SDC1P18827 AC103851.1-201ENST00000506833 274 ntBASIC1.43□□□□□ -2.18
SDC1P18827 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.43□□□□□ -2.18
SDC1P18827 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.43□□□□□ -2.18
SDC1P18827 AC008834.1-201ENST00000511612 175 ntBASIC1.43□□□□□ -2.18
SDC1P18827 Y_RNA.706-201ENST00000516933 99 ntBASIC1.43□□□□□ -2.18
SDC1P18827 Y_RNA.708-201ENST00000516950 96 ntBASIC1.43□□□□□ -2.18
SDC1P18827 AC084364.2-201ENST00000546924 395 ntBASIC1.43□□□□□ -2.18
SDC1P18827 MIR5695-201ENST00000579717 85 ntBASIC1.43□□□□□ -2.18
SDC1P18827 AC100812.1-201ENST00000607622 580 ntBASIC1.43□□□□□ -2.18
SDC1P18827 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.43□□□□□ -2.18
SDC1P18827 WWP1P1-201ENST00000466609 2769 ntBASIC1.43□□□□□ -2.18
SDC1P18827 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.42□□□□□ -2.18
SDC1P18827 AC010615.1-201ENST00000594254 1764 ntBASIC1.42□□□□□ -2.18
SDC1P18827 AP000648.3-201ENST00000623539 4507 ntBASIC1.42□□□□□ -2.18
SDC1P18827 RNU6-661P-201ENST00000362409 107 ntBASIC1.42□□□□□ -2.18
SDC1P18827 Y_RNA.106-201ENST00000363189 100 ntBASIC1.42□□□□□ -2.18
SDC1P18827 Y_RNA.166-201ENST00000363730 102 ntBASIC1.42□□□□□ -2.18
SDC1P18827 RNU6-280P-201ENST00000364145 104 ntBASIC1.42□□□□□ -2.18
SDC1P18827 RNU6-1019P-201ENST00000364424 107 ntBASIC1.42□□□□□ -2.18
SDC1P18827 Y_RNA.404-201ENST00000383978 102 ntBASIC1.42□□□□□ -2.18
SDC1P18827 RNU6-793P-201ENST00000384233 104 ntBASIC1.42□□□□□ -2.18
SDC1P18827 Y_RNA.482-201ENST00000384377 111 ntBASIC1.42□□□□□ -2.18
SDC1P18827 RNU1-139P-201ENST00000391307 165 ntBASIC1.42□□□□□ -2.18
SDC1P18827 RNU4-14P-201ENST00000410858 122 ntBASIC1.42□□□□□ -2.18
SDC1P18827 AC007098.1-201ENST00000420122 367 ntBASIC1.42□□□□□ -2.18
SDC1P18827 AL353997.1-201ENST00000432936 108 ntBASIC1.42□□□□□ -2.18
SDC1P18827 RNU1-98P-201ENST00000458992 160 ntBASIC1.42□□□□□ -2.18
SDC1P18827 RNU6-221P-201ENST00000459541 99 ntBASIC1.42□□□□□ -2.18
SDC1P18827 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.42□□□□□ -2.18
SDC1P18827 RNU6-1114P-201ENST00000516022 107 ntBASIC1.42□□□□□ -2.18
SDC1P18827 AC025647.1-201ENST00000517879 253 ntBASIC1.42□□□□□ -2.18
SDC1P18827 AC005668.1-201ENST00000571142 476 ntBASIC1.42□□□□□ -2.18
SDC1P18827 MZT1P2-201ENST00000604387 248 ntBASIC1.42□□□□□ -2.18
SDC1P18827 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.42□□□□□ -2.18
SDC1P18827 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
SDC1P18827 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SDC1P18827 MTND5P10-201ENST00000603719 1809 ntBASIC1.41□□□□□ -2.18
SDC1P18827 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
SDC1P18827 MIR424-201ENST00000362227 98 ntBASIC1.41□□□□□ -2.18
SDC1P18827 RNU6-874P-201ENST00000362390 105 ntBASIC1.41□□□□□ -2.18
SDC1P18827 SNORA63D-201ENST00000364359 132 ntBASIC1.41□□□□□ -2.18
SDC1P18827 Y_RNA.287-201ENST00000364853 94 ntBASIC1.41□□□□□ -2.18
SDC1P18827 RNU6-417P-201ENST00000384712 107 ntBASIC1.41□□□□□ -2.18
SDC1P18827 RNU6-331P-201ENST00000384724 107 ntBASIC1.41□□□□□ -2.18
SDC1P18827 MIR520A-201ENST00000384862 85 ntBASIC1.41□□□□□ -2.18
SDC1P18827 MIR517C-201ENST00000385103 95 ntBASIC1.41□□□□□ -2.18
SDC1P18827 RNA5SP213-201ENST00000391031 106 ntBASIC1.41□□□□□ -2.18
SDC1P18827 MIR934-201ENST00000401241 83 ntBASIC1.41□□□□□ -2.18
SDC1P18827 USP9YP16-201ENST00000430287 407 ntBASIC1.41□□□□□ -2.18
SDC1P18827 HSPE1P9-201ENST00000440046 311 ntBASIC1.41□□□□□ -2.18
SDC1P18827 RBMX2P4-201ENST00000441256 376 ntBASIC1.41□□□□□ -2.18
SDC1P18827 AC010095.1-201ENST00000443543 144 ntBASIC1.41□□□□□ -2.18
SDC1P18827 USP9YP23-201ENST00000455085 407 ntBASIC1.41□□□□□ -2.18
SDC1P18827 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.41□□□□□ -2.18
SDC1P18827 AC093303.1-201ENST00000514549 295 ntBASIC1.41□□□□□ -2.18
SDC1P18827 Y_RNA.675-201ENST00000516389 149 ntBASIC1.41□□□□□ -2.18
SDC1P18827 Y_RNA.691-201ENST00000516611 103 ntBASIC1.41□□□□□ -2.18
SDC1P18827 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.41□□□□□ -2.18
SDC1P18827 AC105029.1-201ENST00000520250 669 ntBASIC1.41□□□□□ -2.18
SDC1P18827 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.41□□□□□ -2.18
SDC1P18827 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.41□□□□□ -2.18
SDC1P18827 MIR3198-2-201ENST00000577868 80 ntBASIC1.41□□□□□ -2.18
SDC1P18827 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.41□□□□□ -2.18
SDC1P18827 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.4□□□□□ -2.19
SDC1P18827 RNY1P16-201ENST00000363063 111 ntBASIC1.4□□□□□ -2.19
SDC1P18827 U3.8-201ENST00000363675 217 ntBASIC1.4□□□□□ -2.19
SDC1P18827 Y_RNA.179-201ENST00000363844 90 ntBASIC1.4□□□□□ -2.19
SDC1P18827 RNA5SP190-201ENST00000365222 118 ntBASIC1.4□□□□□ -2.19
SDC1P18827 MIR30A-201ENST00000385092 71 ntBASIC1.4□□□□□ -2.19
SDC1P18827 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
SDC1P18827 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SDC1P18827 MIR190B-201ENST00000401119 79 ntBASIC1.4□□□□□ -2.19
SDC1P18827 AC005908.1-201ENST00000468701 347 ntBASIC1.4□□□□□ -2.19
SDC1P18827 AC116353.2-201ENST00000505332 712 ntBASIC1.4□□□□□ -2.19
SDC1P18827 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.4□□□□□ -2.19
SDC1P18827 RNU6-970P-201ENST00000516312 107 ntBASIC1.4□□□□□ -2.19
SDC1P18827 RNU6-1213P-201ENST00000517075 94 ntBASIC1.4□□□□□ -2.19
SDC1P18827 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.4□□□□□ -2.19
SDC1P18827 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC1.4□□□□□ -2.19
SDC1P18827 MIR4285-201ENST00000581001 85 ntBASIC1.4□□□□□ -2.19
SDC1P18827 AC125232.2-201ENST00000592457 143 ntBASIC1.4□□□□□ -2.19
SDC1P18827 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.4□□□□□ -2.19
SDC1P18827 AC010999.1-201ENST00000611856 324 ntBASIC1.4□□□□□ -2.19
SDC1P18827 AC022306.2-201ENST00000617563 647 ntBASIC1.4□□□□□ -2.19
SDC1P18827 MTND5P16-201ENST00000460269 1703 ntBASIC1.4□□□□□ -2.19
SDC1P18827 RNU5F-3P-201ENST00000363767 117 ntBASIC1.39□□□□□ -2.19
SDC1P18827 RNU4-13P-201ENST00000364019 141 ntBASIC1.39□□□□□ -2.19
SDC1P18827 SNORD81.2-201ENST00000365153 76 ntBASIC1.39□□□□□ -2.19
SDC1P18827 RNU6-281P-201ENST00000384212 103 ntBASIC1.39□□□□□ -2.19
SDC1P18827 SNORA75.4-201ENST00000391278 119 ntBASIC1.39□□□□□ -2.19
SDC1P18827 MIR1185-2-201ENST00000408687 86 ntBASIC1.39□□□□□ -2.19
SDC1P18827 RNU6-1001P-201ENST00000411265 100 ntBASIC1.39□□□□□ -2.19
SDC1P18827 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms