Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
LDB3O75112 AL359511.1-201ENST00000402970 211 ntBASIC2.29□□□□□ -2.04
LDB3O75112 AL603908.1-201ENST00000406098 201 ntBASIC2.29□□□□□ -2.04
LDB3O75112 RPS26P42-201ENST00000413485 326 ntBASIC2.29□□□□□ -2.04
LDB3O75112 PIGPP3-201ENST00000425307 415 ntBASIC2.29□□□□□ -2.04
LDB3O75112 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.29□□□□□ -2.04
LDB3O75112 AC009237.7-201ENST00000447357 229 ntBASIC2.29□□□□□ -2.04
LDB3O75112 AC140059.1-201ENST00000489238 361 ntBASIC2.29□□□□□ -2.04
LDB3O75112 SNORA40.9-201ENST00000515895 93 ntBASIC2.29□□□□□ -2.04
LDB3O75112 RNU6-1198P-201ENST00000516904 67 ntBASIC2.29□□□□□ -2.04
LDB3O75112 AP002001.1-203ENST00000534002 267 ntBASIC2.29□□□□□ -2.04
LDB3O75112 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.29□□□□□ -2.04
LDB3O75112 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.29□□□□□ -2.04
LDB3O75112 AL356575.1-201ENST00000603008 283 ntBASIC2.29□□□□□ -2.04
LDB3O75112 AL670379.2-201ENST00000604983 252 ntBASIC2.29□□□□□ -2.04
LDB3O75112 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.29□□□□□ -2.04
LDB3O75112 AC005520.5-201ENST00000613926 164 ntBASIC2.29□□□□□ -2.04
LDB3O75112 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.29□□□□□ -2.04
LDB3O75112 ZNF204P-201ENST00000416749 2397 ntBASIC2.29□□□□□ -2.04
LDB3O75112 RNU4-15P-201ENST00000362613 141 ntBASIC2.28□□□□□ -2.04
LDB3O75112 Y_RNA.117-201ENST00000363294 101 ntBASIC2.28□□□□□ -2.04
LDB3O75112 Y_RNA.297-201ENST00000364950 91 ntBASIC2.28□□□□□ -2.04
LDB3O75112 Y_RNA.418-201ENST00000384029 102 ntBASIC2.28□□□□□ -2.04
LDB3O75112 Y_RNA.570-201ENST00000384750 101 ntBASIC2.28□□□□□ -2.04
LDB3O75112 AC004866.1-201ENST00000411748 78 ntBASIC2.28□□□□□ -2.04
LDB3O75112 AC003685.2-201ENST00000422795 395 ntBASIC2.28□□□□□ -2.04
LDB3O75112 MRPS10P1-201ENST00000448483 130 ntBASIC2.28□□□□□ -2.04
LDB3O75112 PRELID3BP1-201ENST00000457142 540 ntBASIC2.28□□□□□ -2.04
LDB3O75112 UBE2DNL-203ENST00000474922 222 ntBASIC2.28□□□□□ -2.04
LDB3O75112 SNORD116-28-201ENST00000516123 91 ntBASIC2.28□□□□□ -2.04
LDB3O75112 SNORA81.3-201ENST00000517283 198 ntBASIC2.28□□□□□ -2.04
LDB3O75112 RPL21P9-201ENST00000556149 474 ntBASIC2.28□□□□□ -2.04
LDB3O75112 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.28□□□□□ -2.04
LDB3O75112 AL138963.2-201ENST00000605137 226 ntBASIC2.28□□□□□ -2.04
LDB3O75112 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.28□□□□□ -2.04
LDB3O75112 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.28□□□□□ -2.04
LDB3O75112 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LDB3O75112 MIR6073-201ENST00000352083 89 ntBASIC2.27□□□□□ -2.05
LDB3O75112 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
LDB3O75112 snoU2_19.1-201ENST00000362361 80 ntBASIC2.27□□□□□ -2.05
LDB3O75112 RNU4-90P-201ENST00000362773 141 ntBASIC2.27□□□□□ -2.05
LDB3O75112 RNU1-72P-201ENST00000362976 153 ntBASIC2.27□□□□□ -2.05
LDB3O75112 RNU6-137P-201ENST00000363680 108 ntBASIC2.27□□□□□ -2.05
LDB3O75112 RNU6-740P-201ENST00000364734 105 ntBASIC2.27□□□□□ -2.05
LDB3O75112 RNU6-378P-201ENST00000384324 107 ntBASIC2.27□□□□□ -2.05
LDB3O75112 MIR29B2-201ENST00000385055 81 ntBASIC2.27□□□□□ -2.05
LDB3O75112 RNU6-493P-201ENST00000391321 108 ntBASIC2.27□□□□□ -2.05
LDB3O75112 PCNPP3-201ENST00000393579 471 ntBASIC2.27□□□□□ -2.05
LDB3O75112 MIR208B-201ENST00000401172 77 ntBASIC2.27□□□□□ -2.05
LDB3O75112 RNA5SP201-201ENST00000410316 124 ntBASIC2.27□□□□□ -2.05
LDB3O75112 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.27□□□□□ -2.05
LDB3O75112 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.27□□□□□ -2.05
LDB3O75112 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.27□□□□□ -2.05
LDB3O75112 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.27□□□□□ -2.05
LDB3O75112 RPS12P2-201ENST00000439728 269 ntBASIC2.27□□□□□ -2.05
LDB3O75112 AC091179.3-201ENST00000474761 144 ntBASIC2.27□□□□□ -2.05
LDB3O75112 RNU7-110P-201ENST00000516891 62 ntBASIC2.27□□□□□ -2.05
LDB3O75112 DEFB131C-201ENST00000528817 165 ntBASIC2.27□□□□□ -2.05
LDB3O75112 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.27□□□□□ -2.05
LDB3O75112 MIR4658-201ENST00000584344 65 ntBASIC2.27□□□□□ -2.05
LDB3O75112 AC011921.3-201ENST00000605540 361 ntBASIC2.27□□□□□ -2.05
LDB3O75112 PCGEM1.1-201ENST00000613431 131 ntBASIC2.27□□□□□ -2.05
LDB3O75112 AC004792.1-201ENST00000614523 137 ntBASIC2.27□□□□□ -2.05
LDB3O75112 FTX_2.1-201ENST00000618816 94 ntBASIC2.27□□□□□ -2.05
LDB3O75112 AC010297.1-201ENST00000623948 149 ntBASIC2.27□□□□□ -2.05
LDB3O75112 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.27□□□□□ -2.05
LDB3O75112 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.26□□□□□ -2.05
LDB3O75112 Y_RNA.101-201ENST00000363154 102 ntBASIC2.26□□□□□ -2.05
LDB3O75112 RNU6-727P-201ENST00000363592 107 ntBASIC2.26□□□□□ -2.05
LDB3O75112 RNA5SP125-201ENST00000364843 120 ntBASIC2.26□□□□□ -2.05
LDB3O75112 RNU6-1175P-201ENST00000365200 107 ntBASIC2.26□□□□□ -2.05
LDB3O75112 RNU6-1062P-201ENST00000383908 107 ntBASIC2.26□□□□□ -2.05
LDB3O75112 Y_RNA.785-201ENST00000384290 109 ntBASIC2.26□□□□□ -2.05
LDB3O75112 RNU4-70P-201ENST00000384579 139 ntBASIC2.26□□□□□ -2.05
LDB3O75112 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
LDB3O75112 MIR1298-201ENST00000408783 112 ntBASIC2.26□□□□□ -2.05
LDB3O75112 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.26□□□□□ -2.05
LDB3O75112 AL513328.1-201ENST00000446460 224 ntBASIC2.26□□□□□ -2.05
LDB3O75112 AC145146.1-201ENST00000496370 254 ntBASIC2.26□□□□□ -2.05
LDB3O75112 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.26□□□□□ -2.05
LDB3O75112 AC026436.1-201ENST00000510537 270 ntBASIC2.26□□□□□ -2.05
LDB3O75112 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.26□□□□□ -2.05
LDB3O75112 RNU4-71P-201ENST00000516258 113 ntBASIC2.26□□□□□ -2.05
LDB3O75112 RNA5SP54-201ENST00000516951 92 ntBASIC2.26□□□□□ -2.05
LDB3O75112 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.26□□□□□ -2.05
LDB3O75112 AC021269.2-201ENST00000532318 330 ntBASIC2.26□□□□□ -2.05
LDB3O75112 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
LDB3O75112 BX284668.6-201ENST00000606899 438 ntBASIC2.26□□□□□ -2.05
LDB3O75112 AC098479.1-201ENST00000609225 154 ntBASIC2.26□□□□□ -2.05
LDB3O75112 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.26□□□□□ -2.05
LDB3O75112 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
LDB3O75112 MIR5739-201ENST00000619803 80 ntBASIC2.26□□□□□ -2.05
LDB3O75112 IGHVIII-44-202ENST00000636235 289 ntBASIC2.26□□□□□ -2.05
LDB3O75112 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.26□□□□□ -2.05
LDB3O75112 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.26□□□□□ -2.05
LDB3O75112 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
LDB3O75112 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
LDB3O75112 U3.9-201ENST00000363823 204 ntBASIC2.25□□□□□ -2.05
LDB3O75112 SNORA38-201ENST00000363946 132 ntBASIC2.25□□□□□ -2.05
LDB3O75112 Y_RNA.200-201ENST00000364018 102 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms