Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 AL139022.2-201ENST00000606934 443 ntBASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 MIR8064-201ENST00000612863 90 ntBASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 FER-210ENST00000628534 558 ntTSL 5 BASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC-0.44□□□□□ -2.48
TRAV1-2A0A0B4J238 Y_RNA.168-201ENST00000363740 102 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 Y_RNA.238-201ENST00000364441 102 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 MIR520C-201ENST00000385005 87 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 SNORD100-201ENST00000408573 76 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 RNA5SP95-201ENST00000410319 137 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-613P-201ENST00000410412 108 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 AL117339.3-201ENST00000418733 162 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 AL353997.1-201ENST00000432936 108 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 MTCO3P8-201ENST00000453691 755 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 RNA5SP330-201ENST00000517096 96 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-201P-201ENST00000517100 61 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-1028P-201ENST00000517164 93 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-88P-201ENST00000606801 100 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 AC131235.4-201ENST00000609288 620 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 PVT1_3.1-201ENST00000620853 95 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 Six3os1_7.1-201ENST00000621512 201 ntBASIC-0.45□□□□□ -2.48
TRAV1-2A0A0B4J238 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 RNA5SP275-201ENST00000363936 118 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU4-41P-201ENST00000364426 143 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 MIR329-2-201ENST00000385029 84 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 MIR643-201ENST00000385267 97 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 AC096531.1-201ENST00000419107 107 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 AC005534.2-201ENST00000431047 433 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 MTND1P12-201ENST00000455231 147 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 AC092436.3-201ENST00000511788 257 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-977P-201ENST00000516411 103 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-334P-201ENST00000517072 102 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-685P-201ENST00000517088 95 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 AC105185.1-201ENST00000518705 535 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 MTND4LP25-201ENST00000570218 163 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 MIR3118-1-201ENST00000581787 76 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 AC005176.2-201ENST00000596933 147 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 AC012467.1-201ENST00000607740 256 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 AC010999.1-201ENST00000611856 324 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 AC008873.1-201ENST00000625051 138 ntBASIC-0.46□□□□□ -2.48
TRAV1-2A0A0B4J238 RNY4P24-201ENST00000362735 96 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 SNORA18.1-201ENST00000363418 128 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-1097P-201ENST00000363586 107 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-137P-201ENST00000363680 108 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 Y_RNA.796-201ENST00000364268 102 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 Y_RNA.799-201ENST00000364992 102 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 MTND4P3-201ENST00000417829 541 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU7-56P-201ENST00000458744 62 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 snoU13.6-201ENST00000458785 104 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 AC107401.1-201ENST00000503426 685 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 AC114811.1-201ENST00000507207 168 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 RNU6-1003P-201ENST00000517099 105 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 SNORA74.3-201ENST00000517108 154 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 AC068587.4-201ENST00000533893 186 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 FRG2DP-202ENST00000566967 323 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 MIR4804-201ENST00000581683 73 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 AC005730.3-201ENST00000583067 366 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 MIR4645-201ENST00000583158 77 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 AL592221.1-201ENST00000605266 382 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 AC024060.1-201ENST00000607052 494 ntBASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC-0.47□□□□□ -2.48
TRAV1-2A0A0B4J238 SNORA36.1-201ENST00000363424 132 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 RNA5SP48-201ENST00000363969 126 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-61P-201ENST00000365528 109 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 MIR106A-201ENST00000384870 81 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 Y_RNA.578-201ENST00000390903 88 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 RNA5SP482-201ENST00000391269 118 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 MIR891A-201ENST00000401237 79 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 snoU13.21-201ENST00000459368 105 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU4-49P-201ENST00000516080 140 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-430P-201ENST00000517078 107 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-1116P-201ENST00000517269 99 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 AC013828.2-201ENST00000532487 235 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 AC103996.1-201ENST00000555468 102 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 MTND3P13-201ENST00000574391 343 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 RSL24D1P11-201ENST00000591045 491 ntBASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC-0.48□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-433P-201ENST00000363216 104 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 SNORD56.2-201ENST00000363242 71 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 SNORD114-28-201ENST00000363610 72 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 Y_RNA.258-201ENST00000364613 105 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 RNU6-580P-201ENST00000365159 107 ntBASIC-0.49□□□□□ -2.49
TRAV1-2A0A0B4J238 SNORA2A-201ENST00000383885 135 ntBASIC-0.49□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms