Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC26.2■■□□□ 1.78
MSH6P52701 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC26.2■■□□□ 1.78
MSH6P52701 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC26.2■■□□□ 1.78
MSH6P52701 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
MSH6P52701 AC104417.2-201ENST00000562989 1793 ntBASIC26.2■■□□□ 1.78
MSH6P52701 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC26.2■■□□□ 1.78
MSH6P52701 MIR940-201ENST00000401276 94 ntBASIC26.2■■□□□ 1.78
MSH6P52701 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
MSH6P52701 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC26.2■■□□□ 1.78
MSH6P52701 AC009065.1-201ENST00000564055 1225 ntBASIC26.2■■□□□ 1.78
MSH6P52701 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC26.2■■□□□ 1.78
MSH6P52701 AL139424.1-201ENST00000607572 797 ntBASIC26.2■■□□□ 1.78
MSH6P52701 AC010240.3-201ENST00000607688 395 ntBASIC26.2■■□□□ 1.78
MSH6P52701 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
MSH6P52701 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC26.19■■□□□ 1.78
MSH6P52701 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
MSH6P52701 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC26.19■■□□□ 1.78
MSH6P52701 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH6P52701 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH6P52701 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH6P52701 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
MSH6P52701 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
MSH6P52701 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH6P52701 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
MSH6P52701 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH6P52701 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
MSH6P52701 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC26.19■■□□□ 1.78
MSH6P52701 AC018712.1-201ENST00000455767 687 ntBASIC26.19■■□□□ 1.78
MSH6P52701 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC26.19■■□□□ 1.78
MSH6P52701 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC26.19■■□□□ 1.78
MSH6P52701 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC26.18■■□□□ 1.78
MSH6P52701 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
MSH6P52701 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
MSH6P52701 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
MSH6P52701 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
MSH6P52701 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC26.18■■□□□ 1.78
MSH6P52701 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
MSH6P52701 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
MSH6P52701 PMS2P2-201ENST00000425039 1128 ntBASIC26.18■■□□□ 1.78
MSH6P52701 RPL13AP23-201ENST00000480739 586 ntBASIC26.18■■□□□ 1.78
MSH6P52701 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC26.18■■□□□ 1.78
MSH6P52701 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC26.18■■□□□ 1.78
MSH6P52701 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC26.18■■□□□ 1.78
MSH6P52701 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC26.18■■□□□ 1.78
MSH6P52701 AC124864.1-201ENST00000623408 392 ntBASIC26.18■■□□□ 1.78
MSH6P52701 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
MSH6P52701 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
MSH6P52701 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
MSH6P52701 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
MSH6P52701 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
MSH6P52701 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
MSH6P52701 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
MSH6P52701 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
MSH6P52701 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
MSH6P52701 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC26.17■■□□□ 1.78
MSH6P52701 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
MSH6P52701 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
MSH6P52701 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
MSH6P52701 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC26.17■■□□□ 1.78
MSH6P52701 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
MSH6P52701 KRT18P23-201ENST00000435622 1283 ntBASIC26.17■■□□□ 1.78
MSH6P52701 RN7SL606P-201ENST00000472779 293 ntBASIC26.17■■□□□ 1.78
MSH6P52701 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC26.17■■□□□ 1.78
MSH6P52701 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC26.17■■□□□ 1.78
MSH6P52701 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
MSH6P52701 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC26.17■■□□□ 1.78
MSH6P52701 AC009237.14-201ENST00000609975 1594 ntBASIC26.17■■□□□ 1.78
MSH6P52701 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC26.17■■□□□ 1.78
MSH6P52701 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC26.16■■□□□ 1.78
MSH6P52701 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
MSH6P52701 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
MSH6P52701 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
MSH6P52701 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
MSH6P52701 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
MSH6P52701 GUSBP12-201ENST00000513727 720 ntBASIC26.16■■□□□ 1.78
MSH6P52701 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC26.16■■□□□ 1.78
MSH6P52701 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC26.16■■□□□ 1.78
MSH6P52701 AC139887.3-201ENST00000568585 713 ntBASIC26.16■■□□□ 1.78
MSH6P52701 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC26.16■■□□□ 1.78
MSH6P52701 ZNF259P1-201ENST00000407656 1365 ntBASIC26.16■■□□□ 1.78
MSH6P52701 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
MSH6P52701 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
MSH6P52701 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC26.15■■□□□ 1.78
MSH6P52701 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC26.15■■□□□ 1.78
MSH6P52701 MIR564-202ENST00000385049 94 ntBASIC26.15■■□□□ 1.78
MSH6P52701 AC091607.1-201ENST00000490318 1060 ntBASIC26.15■■□□□ 1.78
MSH6P52701 IRF8-202ENST00000562492 946 ntTSL 3 BASIC26.15■■□□□ 1.78
MSH6P52701 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC26.15■■□□□ 1.78
MSH6P52701 LITAF-211ENST00000572255 516 ntTSL 4 BASIC26.15■■□□□ 1.78
MSH6P52701 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC26.15■■□□□ 1.78
MSH6P52701 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
MSH6P52701 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
MSH6P52701 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC26.15■■□□□ 1.78
MSH6P52701 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
MSH6P52701 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC26.15■■□□□ 1.78
MSH6P52701 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
MSH6P52701 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC26.15■■□□□ 1.78
MSH6P52701 PALM-208ENST00000592155 2272 ntTSL 4 BASIC26.15■■□□□ 1.78
MSH6P52701 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC26.14■■□□□ 1.78
MSH6P52701 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms