Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AL353746.1-201ENST00000566293 6881 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
USP3Q9Y6I4 MFSD8-236ENST00000641509 4050 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 SNORD9-201ENST00000362566 104 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 RNU6-117P-201ENST00000365415 107 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 AL359837.1-201ENST00000381357 287 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 MIR449B-201ENST00000384995 97 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 SNORA40.5-201ENST00000391061 128 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 RNU6-1077P-201ENST00000410506 102 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 AC063976.3-201ENST00000426849 329 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 CYCSP4-201ENST00000429682 331 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 AC025647.1-201ENST00000517879 253 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 AC015720.1-201ENST00000565251 277 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.81□□□□□ -1.8
USP3Q9Y6I4 AL049861.1-201ENST00000603130 150 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 uc_338.4-201ENST00000616635 176 ntBASIC3.81□□□□□ -1.8
USP3Q9Y6I4 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.81□□□□□ -1.8
USP3Q9Y6I4 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
USP3Q9Y6I4 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
USP3Q9Y6I4 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
USP3Q9Y6I4 MAPK10-373ENST00000641983 6772 ntBASIC3.8□□□□□ -1.8
USP3Q9Y6I4 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.8□□□□□ -1.8
USP3Q9Y6I4 RNA5SP295-201ENST00000362655 121 ntBASIC3.8□□□□□ -1.8
USP3Q9Y6I4 Y_RNA.114-201ENST00000363265 113 ntBASIC3.8□□□□□ -1.8
USP3Q9Y6I4 RNU6-283P-201ENST00000364788 107 ntBASIC3.8□□□□□ -1.8
USP3Q9Y6I4 Y_RNA.294-201ENST00000364916 102 ntBASIC3.8□□□□□ -1.8
USP3Q9Y6I4 SNORD14D-201ENST00000384390 87 ntBASIC3.8□□□□□ -1.8
USP3Q9Y6I4 MIR181A2-201ENST00000384863 110 ntBASIC3.8□□□□□ -1.8
USP3Q9Y6I4 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
USP3Q9Y6I4 AP000567.1-201ENST00000406413 156 ntBASIC3.8□□□□□ -1.8
USP3Q9Y6I4 AC008155.2-201ENST00000464337 397 ntBASIC3.8□□□□□ -1.8
USP3Q9Y6I4 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.8□□□□□ -1.8
USP3Q9Y6I4 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.8□□□□□ -1.8
USP3Q9Y6I4 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP3Q9Y6I4 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
USP3Q9Y6I4 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.79□□□□□ -1.8
USP3Q9Y6I4 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP3Q9Y6I4 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
USP3Q9Y6I4 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
USP3Q9Y6I4 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.79□□□□□ -1.8
USP3Q9Y6I4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP3Q9Y6I4 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USP3Q9Y6I4 Y_RNA.203-201ENST00000364106 102 ntBASIC3.79□□□□□ -1.8
USP3Q9Y6I4 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.79□□□□□ -1.8
USP3Q9Y6I4 AC126124.2-201ENST00000413542 321 ntBASIC3.79□□□□□ -1.8
USP3Q9Y6I4 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.79□□□□□ -1.8
USP3Q9Y6I4 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.79□□□□□ -1.8
USP3Q9Y6I4 RNU6-579P-201ENST00000516879 102 ntBASIC3.79□□□□□ -1.8
USP3Q9Y6I4 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.79□□□□□ -1.8
USP3Q9Y6I4 NDUFA5P6-201ENST00000542110 379 ntBASIC3.79□□□□□ -1.8
USP3Q9Y6I4 AC091178.2-201ENST00000584401 117 ntBASIC3.79□□□□□ -1.8
USP3Q9Y6I4 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.79□□□□□ -1.8
USP3Q9Y6I4 AC244205.2-202ENST00000635781 342 ntBASIC3.79□□□□□ -1.8
USP3Q9Y6I4 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.79□□□□□ -1.8
USP3Q9Y6I4 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.79□□□□□ -1.8
USP3Q9Y6I4 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.78□□□□□ -1.8
USP3Q9Y6I4 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USP3Q9Y6I4 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.78□□□□□ -1.8
USP3Q9Y6I4 RNA5SP119-201ENST00000362715 117 ntBASIC3.78□□□□□ -1.8
USP3Q9Y6I4 RNU6-1255P-201ENST00000363434 112 ntBASIC3.78□□□□□ -1.8
USP3Q9Y6I4 Y_RNA.634-201ENST00000364811 113 ntBASIC3.78□□□□□ -1.8
USP3Q9Y6I4 RNU6-1240P-201ENST00000365155 104 ntBASIC3.78□□□□□ -1.8
USP3Q9Y6I4 MIR548A3-201ENST00000385297 97 ntBASIC3.78□□□□□ -1.8
USP3Q9Y6I4 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
USP3Q9Y6I4 MIR1183-201ENST00000408856 89 ntBASIC3.78□□□□□ -1.8
USP3Q9Y6I4 RNA5SP511-201ENST00000410487 115 ntBASIC3.78□□□□□ -1.8
USP3Q9Y6I4 SNORA72.7-201ENST00000516349 94 ntBASIC3.78□□□□□ -1.8
USP3Q9Y6I4 RNU6-1061P-201ENST00000516530 99 ntBASIC3.78□□□□□ -1.8
USP3Q9Y6I4 AC105245.1-201ENST00000581934 244 ntBASIC3.78□□□□□ -1.8
USP3Q9Y6I4 MIR6075-201ENST00000620782 95 ntBASIC3.78□□□□□ -1.8
USP3Q9Y6I4 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.78□□□□□ -1.8
USP3Q9Y6I4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.78□□□□□ -1.8
USP3Q9Y6I4 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.78□□□□□ -1.81
USP3Q9Y6I4 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.78□□□□□ -1.81
USP3Q9Y6I4 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.77□□□□□ -1.81
USP3Q9Y6I4 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.77□□□□□ -1.81
USP3Q9Y6I4 SNORA71.3-201ENST00000362582 128 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 Y_RNA.111-201ENST00000363248 100 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 RNA5SP42-201ENST00000364278 115 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 SNORD58C-201ENST00000365223 64 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 RNU6-1138P-201ENST00000365359 106 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 Y_RNA.346-201ENST00000365385 112 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 RNU6-147P-201ENST00000383983 107 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 SNORD116-21-201ENST00000384507 92 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 RNA5SP171-201ENST00000391071 115 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 RNA5SP354-201ENST00000391247 136 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.77□□□□□ -1.81
USP3Q9Y6I4 Y_RNA.617-201ENST00000410920 90 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 MLLT10P1-201ENST00000418346 262 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 RPL30P4-201ENST00000429309 333 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 MTATP6P21-201ENST00000440681 189 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 SNORD33.1-201ENST00000516213 88 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 Y_RNA.690-201ENST00000516603 95 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 MIR3922-201ENST00000585192 84 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 RMST_8.1-201ENST00000610287 165 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 AC096577.2-201ENST00000611455 153 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.77□□□□□ -1.81
USP3Q9Y6I4 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.77□□□□□ -1.81
USP3Q9Y6I4 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.77□□□□□ -1.81
USP3Q9Y6I4 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms