Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 Y_RNA.37-201ENST00000362606 108 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 SNORD115-28-201ENST00000363931 81 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 Y_RNA.351-201ENST00000365436 96 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 Y_RNA.440-201ENST00000384120 114 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 AL353813.1-201ENST00000440700 253 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 AC233266.1-201ENST00000454518 96 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 RPS23P4-201ENST00000487908 423 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 IGLVIV-65-201ENST00000517313 360 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 AL513534.2-201ENST00000603836 250 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 AC145423.2-201ENST00000610631 239 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 AC242852.1-201ENST00000612151 96 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 MIR7154-201ENST00000620673 73 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 AC244015.1-201ENST00000622301 99 ntBASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS9D1Q9Y2B5 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 SNORD58A-201ENST00000383875 65 ntBASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 MIR1911-201ENST00000410783 80 ntBASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 TRBV25OR9-2-201ENST00000438417 374 ntBASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 ABCF2P2-201ENST00000450549 296 ntBASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 snoU13.28-201ENST00000459235 104 ntBASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 RNU2-34P-201ENST00000516534 121 ntBASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 SNORD36C-201ENST00000516733 66 ntBASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 MIR3609-201ENST00000582661 80 ntBASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 MIR7641-1-201ENST00000627518 61 ntBASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS9D1Q9Y2B5 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 RNU6-633P-201ENST00000362612 103 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 RNA5SP175-201ENST00000364275 119 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 MIR129-1-201ENST00000384972 72 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 RNU6-679P-201ENST00000391003 106 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 RNA5SP332-201ENST00000391063 115 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 RNA5SP129-201ENST00000410276 118 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 SNORA7.5-201ENST00000410672 110 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 RN7SKP167-201ENST00000411047 285 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 AL356387.2-201ENST00000422272 243 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 SNRPGP5-201ENST00000456003 220 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 RPL23AP63-201ENST00000498752 471 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 MIR4712-201ENST00000583750 82 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 HSPE1P19-201ENST00000603327 295 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 uc_338.13-201ENST00000618243 179 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 MIR6758-201ENST00000620653 63 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 AC090517.3-201ENST00000625170 141 ntBASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS9D1Q9Y2B5 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
VPS9D1Q9Y2B5 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.34□□□□□ -1.72
VPS9D1Q9Y2B5 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
VPS9D1Q9Y2B5 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 SNORA11F-201ENST00000408237 128 ntBASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 DBIP2-201ENST00000419076 262 ntBASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 RNU7-25P-201ENST00000516544 62 ntBASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 AC091932.4-201ENST00000623386 200 ntBASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS9D1Q9Y2B5 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 MIR126-201ENST00000362291 85 ntBASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 RNU4-16P-201ENST00000364737 141 ntBASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 Y_RNA.430-201ENST00000384081 110 ntBASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 Y_RNA.545-201ENST00000384652 105 ntBASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 MIR607-201ENST00000385241 96 ntBASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 AC091390.1-201ENST00000433904 331 ntBASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 AC114801.3-201ENST00000510231 177 ntBASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 SNORA18.7-201ENST00000516910 131 ntBASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 MIR4697-201ENST00000582977 78 ntBASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
VPS9D1Q9Y2B5 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms