Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU6-245P-201ENST00000384020 107 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 RNU6-418P-201ENST00000384035 107 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 RNU6-159P-201ENST00000391080 106 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 RNU6-370P-201ENST00000411008 104 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 USMG5P1-201ENST00000425964 177 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 MTND3P23-201ENST00000431980 347 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 HMGN2P23-201ENST00000456759 269 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 RN7SL274P-201ENST00000492268 272 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 SCARNA16.2-201ENST00000516520 172 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 AC134698.4-201ENST00000523451 826 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 DEFB122-202ENST00000569013 197 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 MIR4255-201ENST00000579351 72 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 UBE2V2P2-201ENST00000587677 504 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 7SK.7-201ENST00000603504 247 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 AL669831.3-213ENST00000636676 183 ntBASIC1.9□□□□□ -2.11
CPSF3Q9UKF6 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 RNU6-222P-201ENST00000362438 107 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 Y_RNA.132-201ENST00000363421 102 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 RNU6-541P-201ENST00000384709 110 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 MIR10B-201ENST00000385011 110 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 MIR320B2-201ENST00000408479 138 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 NCOR1P3-201ENST00000420479 303 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 AL357134.1-201ENST00000445848 426 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 AL117351.2-201ENST00000513571 157 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 RNVU1-2-201ENST00000516326 135 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 SNORA25.14-201ENST00000516481 132 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 RNU6-344P-201ENST00000516635 111 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 RNU6-1198P-201ENST00000516904 67 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 MIR3683-201ENST00000580847 82 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 MIR4753-201ENST00000585119 83 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 PISRT1.1-201ENST00000616930 107 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 AC008873.1-201ENST00000625051 138 ntBASIC1.89□□□□□ -2.11
CPSF3Q9UKF6 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 RNU6-874P-201ENST00000362390 105 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 RNY1P16-201ENST00000363063 111 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 Y_RNA.142-201ENST00000363491 102 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 MIR586-201ENST00000385035 97 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 SNORA48.1-201ENST00000390879 135 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 AL627390.1-201ENST00000396055 340 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 RNU6-1304P-201ENST00000411374 106 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 MTND4P18-201ENST00000447010 465 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 AC016717.1-201ENST00000448918 286 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 AC091951.2-201ENST00000500762 203 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 AC067942.3-201ENST00000512025 362 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 Y_RNA.706-201ENST00000516933 99 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 RNU6-856P-201ENST00000516959 98 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 GNAI2P1-201ENST00000541815 315 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 AL121579.1-201ENST00000555129 305 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 AC015712.3-201ENST00000559380 164 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 AC100812.1-201ENST00000607622 580 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 MIR8081-201ENST00000611533 95 ntBASIC1.88□□□□□ -2.11
CPSF3Q9UKF6 Y_RNA.106-201ENST00000363189 100 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 RNU6-1188P-201ENST00000363795 107 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 RNU6-1305P-201ENST00000364353 104 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 SNORD48-201ENST00000364953 64 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 RNU6-975P-201ENST00000384296 105 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 RNY3P14-201ENST00000384309 102 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 AC091179.3-201ENST00000474761 144 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 RNU6-277P-201ENST00000516272 106 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 RNU1-117P-201ENST00000517041 158 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 APOOP3-201ENST00000536787 586 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 AC005786.1-201ENST00000588553 154 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 AC010900.2-201ENST00000604508 210 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 AC113139.1-201ENST00000605049 239 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 AC103810.8-201ENST00000607347 118 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 AL359697.1-201ENST00000624879 587 ntBASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CPSF3Q9UKF6 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 AL159152.1-201ENST00000635019 2587 ntBASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 RNU1-62P-201ENST00000362599 164 ntBASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 RNA5SP213-201ENST00000391031 106 ntBASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 Y_RNA.646-201ENST00000410980 101 ntBASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 AC112492.4-201ENST00000456549 352 ntBASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 HMGB3P17-201ENST00000504195 649 ntBASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 AC097473.1-201ENST00000508142 408 ntBASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 RNU6-548P-201ENST00000517083 115 ntBASIC1.86□□□□□ -2.11
CPSF3Q9UKF6 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 173.9 ms