Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.66□□□□□ -1.98
VSX1Q9NZR4 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
VSX1Q9NZR4 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.98
VSX1Q9NZR4 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.65□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.117-201ENST00000363294 101 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 RNU6-1305P-201ENST00000364353 104 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.243-201ENST00000364481 109 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.269-201ENST00000364685 89 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 SNORD31B-201ENST00000364977 69 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 RNU6-234P-201ENST00000365229 104 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.418-201ENST00000384029 102 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 RNU6-1274P-201ENST00000384557 107 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 AL139095.1-201ENST00000404326 391 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 MIR1298-201ENST00000408783 112 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.590-201ENST00000410140 107 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 RNA5SP504-201ENST00000410676 117 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 RNU2-63P-201ENST00000410792 194 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 RNU2-61P-201ENST00000411069 191 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 RNU6-1199P-201ENST00000411249 104 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.65□□□□□ -1.99
VSX1Q9NZR4 EEF1B2P7-201ENST00000451177 676 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 CKS1BP2-201ENST00000497342 240 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.65□□□□□ -1.99
VSX1Q9NZR4 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.65□□□□□ -1.99
VSX1Q9NZR4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.65□□□□□ -1.99
VSX1Q9NZR4 SNORA70.12-201ENST00000516084 153 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.679-201ENST00000516416 91 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 RNU6-1098P-201ENST00000516772 96 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 AC109329.2-201ENST00000519658 482 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.65□□□□□ -1.99
VSX1Q9NZR4 AC055872.1-201ENST00000570978 278 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 AL109918.3-201ENST00000603072 338 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 MIR6733-201ENST00000635723 61 ntBASIC2.65□□□□□ -1.99
VSX1Q9NZR4 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.65□□□□□ -1.99
VSX1Q9NZR4 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
VSX1Q9NZR4 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
VSX1Q9NZR4 RNU1-72P-201ENST00000362976 153 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.83-201ENST00000363005 113 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.122-201ENST00000363331 96 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 RNU6-740P-201ENST00000364734 105 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 SNORD87-201ENST00000364849 89 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 RNU6-1180P-201ENST00000364935 107 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 MIR34B-201ENST00000385076 84 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 MIR1283-1-201ENST00000408494 87 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 U3.40-201ENST00000408706 208 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 AL513477.1-202ENST00000417061 214 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 RNU7-14P-201ENST00000459331 62 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 RPS29P2-201ENST00000479278 136 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 AC023141.11-201ENST00000508864 202 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 SNORA81.3-201ENST00000517283 198 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.64□□□□□ -1.99
VSX1Q9NZR4 AP005660.1-201ENST00000522972 293 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.64□□□□□ -1.99
VSX1Q9NZR4 AC022080.3-201ENST00000544433 482 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.64□□□□□ -1.99
VSX1Q9NZR4 Z83818.1-201ENST00000603584 150 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 AC084757.4-201ENST00000616350 526 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 AC073349.3-201ENST00000617616 186 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.64□□□□□ -1.99
VSX1Q9NZR4 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.64□□□□□ -1.99
VSX1Q9NZR4 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.64□□□□□ -1.99
VSX1Q9NZR4 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
VSX1Q9NZR4 AC080128.1-201ENST00000474389 1917 ntBASIC2.64□□□□□ -1.99
VSX1Q9NZR4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.64□□□□□ -1.99
VSX1Q9NZR4 AL159152.1-201ENST00000635019 2587 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.63□□□□□ -1.99
VSX1Q9NZR4 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.199-201ENST00000364014 102 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 MIR1185-2-201ENST00000408687 86 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 RNU6-1328P-201ENST00000410938 106 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 RNU2-14P-201ENST00000411053 191 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
VSX1Q9NZR4 RNU6-191P-201ENST00000516295 94 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 RNU2-34P-201ENST00000516534 121 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 RPPH1-2P-201ENST00000516688 293 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 RNU6-826P-201ENST00000516827 104 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 SNORA48.11-201ENST00000517015 89 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 AC130289.1-201ENST00000577321 73 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 RPL12P50-201ENST00000603116 116 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 AC007179.3-201ENST00000604976 235 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 YPEL5P2-201ENST00000605553 359 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.63□□□□□ -1.99
VSX1Q9NZR4 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.63□□□□□ -1.99
VSX1Q9NZR4 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
VSX1Q9NZR4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
VSX1Q9NZR4 RNA5SP374-201ENST00000362939 125 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 RNA5SP387-201ENST00000364226 106 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.297-201ENST00000364950 91 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 RNY4P28-201ENST00000365281 93 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 RNU6-546P-201ENST00000383991 107 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 MIR218-1-201ENST00000384999 110 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 MIR548B-201ENST00000385247 97 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 MT-TR-201ENST00000387439 65 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 AL357139.1-201ENST00000407792 426 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 AL451074.5-201ENST00000415894 435 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 MRPS10P1-201ENST00000448483 130 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 Y_RNA.638-201ENST00000459374 113 ntBASIC2.62□□□□□ -1.99
VSX1Q9NZR4 HMGN2P9-201ENST00000476875 229 ntBASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 159 ms