Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 RNA5SP168-201ENST00000516642 112 ntBASIC0.7□□□□□ -2.3
USP42Q9H9J4 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.7□□□□□ -2.3
USP42Q9H9J4 AP002963.1-201ENST00000530590 184 ntBASIC0.7□□□□□ -2.3
USP42Q9H9J4 AL137161.1-201ENST00000532231 390 ntBASIC0.7□□□□□ -2.3
USP42Q9H9J4 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
USP42Q9H9J4 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.7□□□□□ -2.3
USP42Q9H9J4 MIR3913-1-201ENST00000577744 102 ntBASIC0.7□□□□□ -2.3
USP42Q9H9J4 AC104458.1-201ENST00000608243 463 ntBASIC0.7□□□□□ -2.3
USP42Q9H9J4 AL360219.1-201ENST00000610230 366 ntBASIC0.7□□□□□ -2.3
USP42Q9H9J4 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.7□□□□□ -2.3
USP42Q9H9J4 HSBP1P2-201ENST00000299671 229 ntBASIC0.69□□□□□ -2.3
USP42Q9H9J4 RNU4-79P-201ENST00000362764 141 ntBASIC0.69□□□□□ -2.3
USP42Q9H9J4 Y_RNA.124-201ENST00000363339 93 ntBASIC0.69□□□□□ -2.3
USP42Q9H9J4 Y_RNA.287-201ENST00000364853 94 ntBASIC0.69□□□□□ -2.3
USP42Q9H9J4 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.69□□□□□ -2.3
USP42Q9H9J4 RNU2-29P-201ENST00000410423 189 ntBASIC0.69□□□□□ -2.3
USP42Q9H9J4 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.69□□□□□ -2.3
USP42Q9H9J4 AC004386.2-201ENST00000441858 148 ntBASIC0.69□□□□□ -2.3
USP42Q9H9J4 MTCO2P3-201ENST00000442543 421 ntBASIC0.69□□□□□ -2.3
USP42Q9H9J4 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC0.69□□□□□ -2.3
USP42Q9H9J4 CCDC34P1-201ENST00000507441 517 ntBASIC0.69□□□□□ -2.3
USP42Q9H9J4 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC0.69□□□□□ -2.3
USP42Q9H9J4 MTND1P22-201ENST00000510572 951 ntBASIC0.69□□□□□ -2.3
USP42Q9H9J4 RNU6-197P-201ENST00000516680 100 ntBASIC0.69□□□□□ -2.3
USP42Q9H9J4 AC136628.3-201ENST00000521868 290 ntBASIC0.69□□□□□ -2.3
USP42Q9H9J4 FGF7P2-201ENST00000332473 296 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 Y_RNA.85-201ENST00000363014 111 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 RNU5B-2P-201ENST00000363036 113 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 Y_RNA.159-201ENST00000363674 87 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 RNU6-975P-201ENST00000384296 105 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 MIR608-201ENST00000384820 100 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 MIR19B1-201ENST00000384829 87 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 MT-TH-201ENST00000387441 69 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 AC114482.1-201ENST00000418010 247 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC0.68□□□□□ -2.3
USP42Q9H9J4 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.68□□□□□ -2.3
USP42Q9H9J4 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.68□□□□□ -2.3
USP42Q9H9J4 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC0.68□□□□□ -2.3
USP42Q9H9J4 MTCO2P11-201ENST00000431069 680 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 HMGN1P33-201ENST00000432945 451 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 AC002429.1-201ENST00000437672 148 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.68□□□□□ -2.3
USP42Q9H9J4 AC022364.2-201ENST00000457963 554 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 RNU7-180P-201ENST00000459240 63 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 SNORA31.10-201ENST00000516482 106 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 RNU6-1069P-201ENST00000516612 133 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 RNU6-612P-201ENST00000516909 102 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 AC069113.1-201ENST00000517763 267 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
USP42Q9H9J4 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
USP42Q9H9J4 AC097065.2-201ENST00000608159 533 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 AC005562.2-201ENST00000618264 111 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 AL359697.1-201ENST00000624879 587 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 U6.108-201ENST00000637764 58 ntBASIC0.68□□□□□ -2.3
USP42Q9H9J4 RNU6-1031P-201ENST00000384773 107 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 MIR92A1-201ENST00000385233 78 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 MIR100-201ENST00000385259 80 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 SNORA26.8-201ENST00000391306 124 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 MIR942-201ENST00000401111 86 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 RNA5SP511-201ENST00000410487 115 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 AC016909.1-201ENST00000415916 166 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 MTCYBP8-201ENST00000422855 651 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC0.67□□□□□ -2.3
USP42Q9H9J4 RAB28P5-201ENST00000427490 651 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 TIMM9P3-201ENST00000428659 274 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 AL358934.1-201ENST00000432346 324 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.67□□□□□ -2.3
USP42Q9H9J4 AL445567.1-201ENST00000439121 144 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.67□□□□□ -2.3
USP42Q9H9J4 MTCO3P8-201ENST00000453691 755 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.67□□□□□ -2.3
USP42Q9H9J4 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC0.67□□□□□ -2.3
USP42Q9H9J4 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.67□□□□□ -2.3
USP42Q9H9J4 HIF1AP1-201ENST00000553642 175 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 SUB1P2-201ENST00000556401 297 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.67□□□□□ -2.3
USP42Q9H9J4 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.67□□□□□ -2.3
USP42Q9H9J4 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.67□□□□□ -2.3
USP42Q9H9J4 AC064836.2-201ENST00000609491 462 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 MIR2909-201ENST00000617113 69 ntBASIC0.67□□□□□ -2.3
USP42Q9H9J4 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.67□□□□□ -2.3
USP42Q9H9J4 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
USP42Q9H9J4 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.67□□□□□ -2.3
USP42Q9H9J4 RNY3P10-201ENST00000384764 102 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 SNORA12.1-201ENST00000390873 148 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 MIR1197-201ENST00000408818 88 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 RPS3AP1-201ENST00000413190 320 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 OFD1P4Y-201ENST00000455273 1179 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 AL356010.1-201ENST00000456364 102 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 RNU1-142P-201ENST00000516682 145 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC0.66□□□□□ -2.3
USP42Q9H9J4 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.66□□□□□ -2.3
USP42Q9H9J4 MRPS36P4-201ENST00000534436 298 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.66□□□□□ -2.3
USP42Q9H9J4 AC087683.2-201ENST00000611384 326 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 U2.17-201ENST00000611454 95 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 HULC.1-201ENST00000612720 240 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 AC139792.3-201ENST00000623525 224 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 SNORD3E-202ENST00000627253 216 ntBASIC0.66□□□□□ -2.3
USP42Q9H9J4 AC023934.1-201ENST00000574529 2389 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms