Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 Y_RNA.490-201ENST00000384413 102 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 MIR487A-201ENST00000385009 80 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 HMGN2P39-201ENST00000398005 273 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 AL445305.1-201ENST00000432577 575 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 MTCO3P8-201ENST00000453691 755 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 RPL30P15-201ENST00000457129 321 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 SNORA25.14-201ENST00000516481 132 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.702-201ENST00000516843 96 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 AC100812.1-201ENST00000607622 580 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 AL359697.1-201ENST00000624879 587 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.06□□□□□ -2.08
ZNF541Q9H0D2 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 RNY1P16-201ENST00000363063 111 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.99-201ENST00000363138 105 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 SNORD115-32-201ENST00000364079 82 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 SNORA16.1-201ENST00000364597 132 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 SNORD31B-201ENST00000364977 69 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 RNU6-160P-201ENST00000384591 107 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 MIR613-201ENST00000385248 95 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 SNORA12.2-201ENST00000391040 156 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 AC243428.1-201ENST00000421099 264 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 AC009474.2-201ENST00000451383 136 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 RPL30P10-201ENST00000488148 337 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 RNU6-1213P-201ENST00000517075 94 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 RNU6-58P-201ENST00000517143 103 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 AL669831.3-213ENST00000636676 183 ntBASIC2.05□□□□□ -2.08
ZNF541Q9H0D2 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.191-201ENST00000363972 113 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 RNU1-42P-201ENST00000364033 160 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 RNU6-1305P-201ENST00000364353 104 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.387-201ENST00000383918 102 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.404-201ENST00000383978 102 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 MIR518A2-201ENST00000384966 87 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 MIR300-201ENST00000401138 83 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 AC007098.1-201ENST00000420122 367 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 AC123900.1-201ENST00000420390 96 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 AC092423.1-201ENST00000430165 186 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 MTCO3P29-201ENST00000432119 779 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 AC007215.1-201ENST00000464893 276 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 ATP5EP1-201ENST00000510257 156 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 RNU6-277P-201ENST00000516272 106 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 SCARNA16.2-201ENST00000516520 172 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 RNA5SP384-201ENST00000516615 116 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 MIR514B-201ENST00000516774 80 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 RNU1-117P-201ENST00000517041 158 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.804-201ENST00000615262 101 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 AC133104.2-201ENST00000615272 193 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.04□□□□□ -2.08
ZNF541Q9H0D2 BX322639.1-202ENST00000423987 2213 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 AL596028.1-201ENST00000326971 197 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 RNU6-23P-201ENST00000363283 107 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 RNU5F-3P-201ENST00000363767 117 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 RNU6-280P-201ENST00000364145 104 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.259-201ENST00000364619 101 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 RNU6-42P-201ENST00000384165 107 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 RNU6-1297P-201ENST00000384415 104 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 MTCYBP4-201ENST00000401524 249 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 AL033519.2-201ENST00000403958 392 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 BX510359.4-201ENST00000423750 193 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 MTCYBP10-201ENST00000424905 650 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 AC074290.1-201ENST00000448883 135 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 Y_RNA.653-201ENST00000459091 95 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 SNORA31.25-201ENST00000517242 134 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 RRN3P3-201ENST00000549207 578 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 AL355802.3-201ENST00000607571 545 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 AL132765.2-201ENST00000610812 351 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 RMST_2.1-201ENST00000617263 136 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 MIR1302-1-201ENST00000637932 143 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 MTND5P35-201ENST00000557537 1720 ntBASIC2.03□□□□□ -2.08
ZNF541Q9H0D2 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.03□□□□□ -2.09
ZNF541Q9H0D2 MTND4P1-201ENST00000457501 1466 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 RNU1-76P-201ENST00000362903 159 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 RNU6-17P-201ENST00000384245 107 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 RNU6-18P-201ENST00000384527 107 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 Y_RNA.529-201ENST00000384586 119 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 AC139712.2-201ENST00000424302 339 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 AC007395.1-201ENST00000451333 677 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 RPS27P21-201ENST00000486977 252 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 RNA5SP102-201ENST00000516865 106 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 FRG2DP-202ENST00000566967 323 ntBASIC2.02□□□□□ -2.09
ZNF541Q9H0D2 AC104581.2-201ENST00000572227 430 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms