Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 MIR6759-201ENST00000638110 65 ntBASIC0.42□□□□□ -2.34
UPF3BQ9BZI7 Y_RNA.60-201ENST00000362831 98 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 RNU4-48P-201ENST00000365559 182 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 Y_RNA.518-201ENST00000384552 113 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 MIR454-201ENST00000390180 115 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 AC244023.1-201ENST00000426884 112 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 AC245047.3-201ENST00000429428 127 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 MTCO2P7-201ENST00000446518 666 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 U7.7-201ENST00000459276 60 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 RNU6-410P-201ENST00000517006 107 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 AC069113.1-201ENST00000517763 267 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 MIR4775-201ENST00000581168 75 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 AC010620.1-201ENST00000601088 1102 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 AC242498.1-201ENST00000604134 111 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 AC243994.1-201ENST00000618627 109 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 AL078595.3-201ENST00000623815 1166 ntBASIC0.41□□□□□ -2.34
UPF3BQ9BZI7 Y_RNA.170-201ENST00000363746 110 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 RNU6-1240P-201ENST00000365155 104 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 SNORD116-13-201ENST00000384408 92 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AL355796.1-201ENST00000406706 323 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AL512286.1-201ENST00000439244 400 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 EPS15P1-201ENST00000448836 336 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 RNU7-57P-201ENST00000459540 60 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AC007215.1-201ENST00000464893 276 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AL049830.1-201ENST00000468034 425 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 SNORD27.1-201ENST00000516319 72 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AC025647.1-201ENST00000517879 253 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 MIR4509-3-201ENST00000578671 94 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 MIR4509-2-201ENST00000583920 94 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AC005771.1-201ENST00000585581 349 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 SNORA28-201ENST00000606769 126 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AL157392.4-201ENST00000609756 345 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AC091304.9-201ENST00000612091 226 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AC107308.1-201ENST00000615897 301 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 MIR4509-1-201ENST00000618224 94 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 AL049777.1-201ENST00000622740 518 ntBASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.4□□□□□ -2.35
UPF3BQ9BZI7 Y_RNA.367-201ENST00000365544 101 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 RNU6-945P-201ENST00000383947 107 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 RNU6-906P-201ENST00000384700 70 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 AC016909.1-201ENST00000415916 166 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 MTCO2P3-201ENST00000442543 421 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 RNU7-182P-201ENST00000459009 62 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 RNU6-221P-201ENST00000459541 99 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 RNU2-69P-201ENST00000516061 100 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 RN7SKP12-201ENST00000516275 143 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 RSL24D1P11-201ENST00000591045 491 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 AC068790.2-201ENST00000602601 557 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 Z83818.1-201ENST00000603584 150 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 AL360219.1-201ENST00000610230 366 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 AC008873.1-201ENST00000625051 138 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 snoZ196.1-201ENST00000625269 89 ntBASIC0.39□□□□□ -2.35
UPF3BQ9BZI7 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 RNU6-1335P-201ENST00000365426 107 ntBASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 SNORA75.2-201ENST00000391138 150 ntBASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 RNA5SP299-201ENST00000391203 116 ntBASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 SNORA75.3-201ENST00000391231 150 ntBASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 AC010493.1-201ENST00000513479 292 ntBASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 AP003327.1-201ENST00000529684 127 ntBASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 MTND4P33-201ENST00000556706 766 ntBASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 AC025449.1-201ENST00000603896 529 ntBASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 AC097065.2-201ENST00000608159 533 ntBASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 SEPT14P19-203ENST00000633205 211 ntBASIC0.38□□□□□ -2.35
UPF3BQ9BZI7 Y_RNA.399-201ENST00000383955 105 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 SNORA67.2-201ENST00000384300 149 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AC005002.2-201ENST00000438228 269 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 USP9YP12-201ENST00000450481 570 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AC233266.1-201ENST00000454518 96 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AC245047.8-201ENST00000456455 284 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 snoU13.6-201ENST00000458785 104 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 Vault.3-201ENST00000516676 95 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 MIR4778-201ENST00000577635 80 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 MIR4636-201ENST00000582271 80 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 SNRPGP20-201ENST00000604477 205 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AC004832.4-201ENST00000608952 331 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AC242852.1-201ENST00000612151 96 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AL138726.1-201ENST00000614873 333 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AC244015.1-201ENST00000622301 99 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 AC067863.3-201ENST00000624172 122 ntBASIC0.37□□□□□ -2.35
UPF3BQ9BZI7 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.36□□□□□ -2.35
UPF3BQ9BZI7 RNU6-500P-201ENST00000362349 107 ntBASIC0.36□□□□□ -2.35
UPF3BQ9BZI7 RNU5B-2P-201ENST00000363036 113 ntBASIC0.36□□□□□ -2.35
UPF3BQ9BZI7 RNU6-1097P-201ENST00000363586 107 ntBASIC0.36□□□□□ -2.35
UPF3BQ9BZI7 RNU5E-5P-201ENST00000365379 116 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms