Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MTND1P11-201ENST00000456661 876 ntBASIC2.09□□□□□ -2.07
CHMP4AQ9BY43 RNU1-98P-201ENST00000458992 160 ntBASIC2.09□□□□□ -2.07
CHMP4AQ9BY43 RPS26P45-201ENST00000471748 340 ntBASIC2.09□□□□□ -2.07
CHMP4AQ9BY43 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.09□□□□□ -2.07
CHMP4AQ9BY43 AC005668.1-201ENST00000571142 476 ntBASIC2.09□□□□□ -2.07
CHMP4AQ9BY43 SNORD53B-201ENST00000577887 78 ntBASIC2.09□□□□□ -2.07
CHMP4AQ9BY43 MIR3672-201ENST00000584290 82 ntBASIC2.09□□□□□ -2.07
CHMP4AQ9BY43 AL355802.3-201ENST00000607571 545 ntBASIC2.09□□□□□ -2.07
CHMP4AQ9BY43 MIR8081-201ENST00000611533 95 ntBASIC2.09□□□□□ -2.07
CHMP4AQ9BY43 AC006026.1-201ENST00000444025 1803 ntBASIC2.09□□□□□ -2.08
CHMP4AQ9BY43 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
CHMP4AQ9BY43 RNU6-280P-201ENST00000364145 104 ntBASIC2.08□□□□□ -2.08
CHMP4AQ9BY43 MIR517A-201ENST00000385001 87 ntBASIC2.08□□□□□ -2.08
CHMP4AQ9BY43 SNORD115-47-201ENST00000391226 86 ntBASIC2.08□□□□□ -2.08
CHMP4AQ9BY43 RNU6-221P-201ENST00000459541 99 ntBASIC2.08□□□□□ -2.08
CHMP4AQ9BY43 MTCYBP18-201ENST00000501056 747 ntBASIC2.08□□□□□ -2.08
CHMP4AQ9BY43 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.08□□□□□ -2.08
CHMP4AQ9BY43 AL161670.1-201ENST00000554348 137 ntBASIC2.08□□□□□ -2.08
CHMP4AQ9BY43 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.08□□□□□ -2.08
CHMP4AQ9BY43 AC009033.1-201ENST00000624279 431 ntBASIC2.08□□□□□ -2.08
CHMP4AQ9BY43 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.08□□□□□ -2.08
CHMP4AQ9BY43 ZNF204P-201ENST00000416749 2397 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 AP000648.3-201ENST00000623539 4507 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 Y_RNA.212-201ENST00000364177 102 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 RNA5SP363-201ENST00000365072 115 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 RNU6-1240P-201ENST00000365155 104 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 Y_RNA.453-201ENST00000384223 109 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 U8.10-201ENST00000384260 133 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 MIR487A-201ENST00000385009 80 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 MRPL35P1-201ENST00000404272 572 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 SNX2P2-201ENST00000424553 323 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 AC019193.3-201ENST00000609144 554 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 AL359075.3-201ENST00000613288 217 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 AC068137.4-201ENST00000638485 296 ntBASIC2.07□□□□□ -2.08
CHMP4AQ9BY43 RNU6-1266P-201ENST00000362794 105 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 SNORD50.1-201ENST00000362987 71 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 MIR194-1-201ENST00000384892 85 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 MIR548B-201ENST00000385247 97 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 RNU6-57P-201ENST00000411348 103 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 AC009161.1-201ENST00000417306 376 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 AC092989.1-201ENST00000481235 277 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 HMGN1P12-201ENST00000499125 195 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 MTCO2P30-201ENST00000503662 364 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 RNU1-142P-201ENST00000516682 145 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 MIR3942-201ENST00000585264 109 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 U4.5-201ENST00000617137 123 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 MIR3662-201ENST00000637030 95 ntBASIC2.06□□□□□ -2.08
CHMP4AQ9BY43 U3.8-201ENST00000363675 217 ntBASIC2.05□□□□□ -2.08
CHMP4AQ9BY43 SNORA67.2-201ENST00000384300 149 ntBASIC2.05□□□□□ -2.08
CHMP4AQ9BY43 RN7SKP101-201ENST00000411376 320 ntBASIC2.05□□□□□ -2.08
CHMP4AQ9BY43 AC004965.1-201ENST00000413033 213 ntBASIC2.05□□□□□ -2.08
CHMP4AQ9BY43 AL513185.2-201ENST00000425543 193 ntBASIC2.05□□□□□ -2.08
CHMP4AQ9BY43 AC073910.1-201ENST00000445047 438 ntBASIC2.05□□□□□ -2.08
CHMP4AQ9BY43 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.05□□□□□ -2.08
CHMP4AQ9BY43 SNORD13-201ENST00000459299 104 ntBASIC2.05□□□□□ -2.08
CHMP4AQ9BY43 Y_RNA.655-201ENST00000515919 96 ntBASIC2.05□□□□□ -2.08
CHMP4AQ9BY43 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.05□□□□□ -2.08
CHMP4AQ9BY43 AC006001.4-201ENST00000622243 395 ntBASIC2.05□□□□□ -2.08
CHMP4AQ9BY43 RNU6-306P-201ENST00000384617 107 ntBASIC2.04□□□□□ -2.08
CHMP4AQ9BY43 RPL30P13-201ENST00000418873 348 ntBASIC2.04□□□□□ -2.08
CHMP4AQ9BY43 AC016717.1-201ENST00000448918 286 ntBASIC2.04□□□□□ -2.08
CHMP4AQ9BY43 AL163195.1-201ENST00000496941 348 ntBASIC2.04□□□□□ -2.08
CHMP4AQ9BY43 RNU6-1314P-201ENST00000517139 104 ntBASIC2.04□□□□□ -2.08
CHMP4AQ9BY43 MTND1P5-201ENST00000517906 940 ntBASIC2.04□□□□□ -2.08
CHMP4AQ9BY43 SUB1P3-201ENST00000564581 315 ntBASIC2.04□□□□□ -2.08
CHMP4AQ9BY43 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.04□□□□□ -2.08
CHMP4AQ9BY43 AC022432.1-201ENST00000595739 310 ntBASIC2.04□□□□□ -2.08
CHMP4AQ9BY43 AC124303.1-201ENST00000605703 360 ntBASIC2.04□□□□□ -2.08
CHMP4AQ9BY43 AC006504.8-201ENST00000621046 635 ntBASIC2.04□□□□□ -2.08
CHMP4AQ9BY43 Y_RNA.135-201ENST00000363439 95 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 SNORD116-11-201ENST00000383882 92 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 MIR32-201ENST00000384965 70 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 MIR548F1-201ENST00000408667 84 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 AC004866.1-201ENST00000411748 78 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 RPS27P16-201ENST00000425758 201 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 AC079354.2-201ENST00000453523 154 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 RNU7-94P-201ENST00000459576 63 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 RNU6-718P-201ENST00000516166 105 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 BX248123.2-201ENST00000606318 124 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 AC040896.1-201ENST00000613819 479 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 AC093913.1-201ENST00000614178 329 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 AL078604.3-201ENST00000615580 211 ntBASIC2.03□□□□□ -2.08
CHMP4AQ9BY43 RNA5SP432-201ENST00000362480 116 ntBASIC2.02□□□□□ -2.09
CHMP4AQ9BY43 Y_RNA.319-201ENST00000365138 92 ntBASIC2.02□□□□□ -2.09
CHMP4AQ9BY43 Z82188.1-201ENST00000436709 154 ntBASIC2.02□□□□□ -2.09
CHMP4AQ9BY43 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.02□□□□□ -2.09
CHMP4AQ9BY43 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.02□□□□□ -2.09
CHMP4AQ9BY43 RNU7-34P-201ENST00000459394 64 ntBASIC2.02□□□□□ -2.09
CHMP4AQ9BY43 RPL31P58-201ENST00000469001 379 ntBASIC2.02□□□□□ -2.09
CHMP4AQ9BY43 AC025647.1-201ENST00000517879 253 ntBASIC2.02□□□□□ -2.09
CHMP4AQ9BY43 AL137100.2-201ENST00000555786 315 ntBASIC2.02□□□□□ -2.09
CHMP4AQ9BY43 AP000942.3-201ENST00000603702 160 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms