| BEGAIN | Q9BUH8 | TRIM36-201 | ENST00000282369 | 4050 nt | APPRIS P1 TSL 1 (best) BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | RNU4-13P-201 | ENST00000364019 | 141 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | SNORA25.7-201 | ENST00000364375 | 127 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | Y_RNA.432-201 | ENST00000384087 | 111 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | RNU6-476P-201 | ENST00000384726 | 107 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | AC245052.1-201 | ENST00000426213 | 410 nt | TSL 3 BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | CYCSP4-201 | ENST00000429682 | 331 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | FAM208A-202 | ENST00000431842 | 7119 nt | TSL 1 (best) BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | TRBV25OR9-2-201 | ENST00000438417 | 374 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | SNRPGP3-201 | ENST00000469405 | 227 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | FCF1P8-201 | ENST00000510322 | 597 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | AC027419.1-201 | ENST00000522976 | 328 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | AC091965.1-202 | ENST00000607662 | 397 nt | TSL 3 BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | AL021707.8-201 | ENST00000609428 | 183 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | MIR7154-201 | ENST00000620673 | 73 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | MACF1-231 | ENST00000564288 | 24828 nt | APPRIS ALT2 TSL 5 BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | C21orf91-201 | ENST00000284881 | 5433 nt | APPRIS P4 TSL 2 BASIC | 4.42 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | AC114316.2-202 | ENST00000502934 | 2957 nt | TSL 2 BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | FAT3-204 | ENST00000525166 | 18699 nt | TSL 5 BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | C5orf51-201 | ENST00000381647 | 5241 nt | APPRIS P1 TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | RNU6-1274P-201 | ENST00000384557 | 107 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | MIR181A2-201 | ENST00000384863 | 110 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | AC008134.1-201 | ENST00000420943 | 193 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | AC016717.1-201 | ENST00000448918 | 286 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | AC008155.2-201 | ENST00000464337 | 397 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | AC010531.2-201 | ENST00000465012 | 153 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | ATP5EP1-201 | ENST00000510257 | 156 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | AC100770.1-201 | ENST00000532310 | 322 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | DISC1FP1-204 | ENST00000563681 | 466 nt | TSL 3 BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | AL137849.1-201 | ENST00000604767 | 169 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | MIR7702-201 | ENST00000621931 | 59 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | PCDH15-208 | ENST00000395432 | 6901 nt | TSL 5 BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | MACC1-201 | ENST00000332878 | 2994 nt | APPRIS P1 TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | DNAH12-202 | ENST00000351747 | 9542 nt | TSL 5 BASIC | 4.4 | □□□□□ -1.7 | | |
| BEGAIN | Q9BUH8 | PDCD5P2-201 | ENST00000507570 | 312 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNU6-1299P-201 | ENST00000516316 | 100 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNU6-63P-201 | ENST00000516690 | 95 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC025647.1-201 | ENST00000517879 | 253 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC087521.2-201 | ENST00000499066 | 2190 nt | TSL 2 BASIC | 4.4 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | SULT1B1-201 | ENST00000310613 | 7115 nt | APPRIS P1 TSL 1 (best) BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | WHAMMP2-201 | ENST00000512149 | 5482 nt | TSL 5 BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNU6-944P-201 | ENST00000364023 | 107 nt | BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNU6-1144P-201 | ENST00000384247 | 104 nt | BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | SNORA72-201 | ENST00000384339 | 132 nt | BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNA5SP511-201 | ENST00000410487 | 115 nt | BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNA5SP104-201 | ENST00000410989 | 118 nt | BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC010731.3-201 | ENST00000415029 | 566 nt | TSL 4 BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | CYCSP49-201 | ENST00000420810 | 319 nt | BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | Y_RNA.692-201 | ENST00000516627 | 105 nt | BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC135178.3-204 | ENST00000585181 | 451 nt | TSL 2 BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC015911.6-201 | ENST00000588445 | 457 nt | TSL 3 BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC023043.3-201 | ENST00000593113 | 385 nt | BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC013412.1-201 | ENST00000610687 | 192 nt | BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | MBNL1-211 | ENST00000463374 | 5092 nt | APPRIS P4 TSL 1 (best) BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | NLGN1-206 | ENST00000457714 | 8242 nt | APPRIS P1 TSL 1 (best) BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | ADAT2-203 | ENST00000606514 | 6651 nt | TSL 1 (best) BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | PPIP5K2-217 | ENST00000627916 | 6010 nt | APPRIS ALT2 TSL 5 BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | Z82209.1-201 | ENST00000422141 | 2135 nt | BASIC | 4.39 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | GABRG2-229 | ENST00000641017 | 3628 nt | BASIC | 4.38 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | ZNF962P-201 | ENST00000443465 | 3140 nt | BASIC | 4.38 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | SUPT16HP1-201 | ENST00000537175 | 3133 nt | BASIC | 4.38 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNU6-978P-201 | ENST00000364371 | 103 nt | BASIC | 4.38 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNU6-1235P-201 | ENST00000384559 | 107 nt | BASIC | 4.38 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC016925.1-201 | ENST00000458303 | 298 nt | BASIC | 4.38 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNU6-498P-201 | ENST00000459468 | 107 nt | BASIC | 4.38 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | PPBPP1-201 | ENST00000510807 | 373 nt | BASIC | 4.38 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | MIR2681-201 | ENST00000581814 | 105 nt | BASIC | 4.38 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | ZNF415-207 | ENST00000595193 | 2479 nt | TSL 1 (best) BASIC | 4.38 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | ZNF439-201 | ENST00000304030 | 2622 nt | APPRIS P1 TSL 1 (best) BASIC | 4.38 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | TSLP-202 | ENST00000379706 | 2411 nt | TSL 1 (best) BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | TANK-201 | ENST00000259075 | 2152 nt | APPRIS P1 TSL 1 (best) BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNU6-484P-201 | ENST00000384016 | 107 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | Y_RNA.525-201 | ENST00000384570 | 113 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNU6-429P-201 | ENST00000384582 | 108 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | TRAJ7-201 | ENST00000390530 | 59 nt | APPRIS P1 BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNY4P18-201 | ENST00000391107 | 89 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AL138962.1-201 | ENST00000417987 | 411 nt | TSL 5 BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC017083.1-201 | ENST00000428093 | 483 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC093423.2-201 | ENST00000429074 | 437 nt | TSL 3 BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC023449.1-201 | ENST00000454464 | 154 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC025445.1-201 | ENST00000502728 | 300 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNU6-586P-201 | ENST00000517265 | 104 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC107934.2-201 | ENST00000518653 | 310 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC068992.1-202 | ENST00000519280 | 270 nt | TSL 3 BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | CYCSP26-201 | ENST00000534107 | 320 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC018630.3-201 | ENST00000542637 | 96 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AC015720.1-201 | ENST00000565251 | 277 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | AL049861.1-201 | ENST00000603130 | 150 nt | BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | HS1BP3-208 | ENST00000631166 | 78 nt | TSL 5 BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | BRCA2-201 | ENST00000380152 | 11986 nt | APPRIS P1 TSL 5 BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | SAMD3-214 | ENST00000532763 | 3690 nt | TSL 5 BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RXFP1-205 | ENST00000448688 | 3861 nt | TSL 1 (best) BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | SCAI-201 | ENST00000336505 | 12079 nt | APPRIS P1 TSL 1 (best) BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | UTRN-204 | ENST00000367545 | 12339 nt | APPRIS P1 TSL 5 BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | TBC1D31-214 | ENST00000522420 | 3167 nt | TSL 1 (best) BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | PDE1A-205 | ENST00000435564 | 4885 nt | APPRIS P3 TSL 1 (best) BASIC | 4.37 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | HIF1A-201 | ENST00000323441 | 3555 nt | TSL 1 (best) BASIC | 4.36 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | MTUS1-216 | ENST00000519263 | 4089 nt | TSL 2 BASIC | 4.36 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | RNU6-235P-201 | ENST00000362644 | 107 nt | BASIC | 4.36 | □□□□□ -1.71 | | |
| BEGAIN | Q9BUH8 | SNORA5B-201 | ENST00000363786 | 132 nt | BASIC | 4.36 | □□□□□ -1.71 | | |