Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 AC104027.1-201ENST00000521887 300 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 AC005828.6-201ENST00000606610 232 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 AC069528.2-201ENST00000624849 1991 ntBASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.08□□□□□ -1.92
CLIP3Q96DZ5 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 AC093831.2-201ENST00000624393 3427 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 RNU4-15P-201ENST00000362613 141 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 RPL21P3-201ENST00000395517 478 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 HMGN2P35-201ENST00000412164 270 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 CKS1BP2-201ENST00000497342 240 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 RNA5SP341-201ENST00000516261 117 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 MIR2276-201ENST00000516886 89 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 RNU6-586P-201ENST00000517265 104 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 MIR5692C2-201ENST00000577959 77 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 MIR4325-201ENST00000583049 90 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 MIR6733-201ENST00000635723 61 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 AC009487.2-201ENST00000420969 6821 ntBASIC3.07□□□□□ -1.92
CLIP3Q96DZ5 RNU1-70P-201ENST00000362618 164 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 RNU6-1117P-201ENST00000384525 104 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 RNU2-51P-201ENST00000410708 197 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 RNU2-63P-201ENST00000410792 194 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 AC003685.2-201ENST00000422795 395 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 CST9LP2-201ENST00000437612 320 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 AC010095.1-201ENST00000443543 144 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 IFNA11P-201ENST00000446352 526 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 AC145146.1-201ENST00000496370 254 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 AC005176.2-201ENST00000596933 147 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 AC005520.5-201ENST00000613926 164 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 AC006001.4-201ENST00000622243 395 ntBASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.06□□□□□ -1.92
CLIP3Q96DZ5 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 MIR422A-201ENST00000362286 90 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 RNA5SP383-201ENST00000362934 120 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 RNU6-1290P-201ENST00000362957 109 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 Y_RNA.262-201ENST00000364641 102 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 Y_RNA.272-201ENST00000364696 102 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 RNU6-22P-201ENST00000384355 107 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 RNU6-959P-201ENST00000384671 107 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 RNU6-131P-201ENST00000391144 107 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 RNA5SP201-201ENST00000410316 124 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 RPS26P42-201ENST00000413485 326 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 AL161788.1-201ENST00000441805 169 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 AC104389.3-201ENST00000445629 235 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 RNU6-191P-201ENST00000516295 94 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 AP005660.1-201ENST00000522972 293 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 AC233702.2-202ENST00000562547 291 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 AL138963.2-201ENST00000605137 226 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 AC018692.3-201ENST00000623929 123 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 snoU18.1-201ENST00000629629 71 ntBASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.05□□□□□ -1.92
CLIP3Q96DZ5 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 Y_RNA.101-201ENST00000363154 102 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 RNU6-873P-201ENST00000363833 107 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 RNU6-211P-201ENST00000384047 107 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 MIR95-201ENST00000385072 81 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 MIR208B-201ENST00000401172 77 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 AL357139.1-201ENST00000407792 426 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 RNU6-735P-201ENST00000410612 107 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 RNU6-1199P-201ENST00000411249 104 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 AC005042.3-201ENST00000453230 174 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 snoU13.6-201ENST00000458785 104 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 RNA5SP76-201ENST00000516277 87 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 RNU6-479P-201ENST00000516348 105 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 SUMO2P18-201ENST00000518873 252 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 PCGEM1.1-201ENST00000613431 131 ntBASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.04□□□□□ -1.92
CLIP3Q96DZ5 AC000403.1-201ENST00000613696 3585 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 181.9 ms