Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
ERCC4Q92889 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
ERCC4Q92889 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
ERCC4Q92889 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.11□□□□□ -1.91
ERCC4Q92889 UBE2WP1-201ENST00000362030 340 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 Y_RNA.54-201ENST00000362766 105 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 RNU6-727P-201ENST00000363592 107 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 Y_RNA.331-201ENST00000365267 102 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 SNORA18.2-201ENST00000383865 132 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 Y_RNA.415-201ENST00000384012 112 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 Y_RNA.498-201ENST00000384460 102 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 MIR592-201ENST00000384959 97 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 AC027124.2-201ENST00000428249 105 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.11□□□□□ -1.91
ERCC4Q92889 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.11□□□□□ -1.91
ERCC4Q92889 AC005042.3-201ENST00000453230 174 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.11□□□□□ -1.91
ERCC4Q92889 AC004486.1-201ENST00000546846 233 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 MIR3670-2-201ENST00000582974 65 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 MIR3670-1-201ENST00000584160 65 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 MIR3670-3-201ENST00000584855 65 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 AC093732.2-201ENST00000607950 274 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 MIR3670-4-201ENST00000612260 65 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 IGHVIII-44-202ENST00000636235 289 ntBASIC3.11□□□□□ -1.91
ERCC4Q92889 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.11□□□□□ -1.91
ERCC4Q92889 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.1□□□□□ -1.91
ERCC4Q92889 SNORA68.1-201ENST00000364537 132 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 RNU6-1328P-201ENST00000410938 106 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 MTCO1P5-201ENST00000433573 344 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.1□□□□□ -1.91
ERCC4Q92889 RPL23AP3-201ENST00000453844 468 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 SNORA9.3-201ENST00000516383 129 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 RPPH1-2P-201ENST00000516688 293 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.1□□□□□ -1.91
ERCC4Q92889 AC027176.1-201ENST00000560204 514 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.1□□□□□ -1.91
ERCC4Q92889 RPL30P11-203ENST00000598995 310 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 RPL17P51-201ENST00000605218 238 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 SNORD11B-201ENST00000607707 90 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 AC004467.1-201ENST00000615678 330 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 AC091932.3-201ENST00000624223 323 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 AC068205.3-201ENST00000636385 468 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 MIR3674-201ENST00000636576 68 ntBASIC3.1□□□□□ -1.91
ERCC4Q92889 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.1□□□□□ -1.91
ERCC4Q92889 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.1□□□□□ -1.91
ERCC4Q92889 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
ERCC4Q92889 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
ERCC4Q92889 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
ERCC4Q92889 Y_RNA.65-201ENST00000362846 100 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 Y_RNA.76-201ENST00000362931 109 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 RNU6-486P-201ENST00000363116 107 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 RNA5SP393-201ENST00000363423 117 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 Y_RNA.275-201ENST00000364726 110 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 Y_RNA.383-201ENST00000383855 97 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 RNU6-1264P-201ENST00000383891 107 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 RNU6-1310P-201ENST00000384153 107 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
ERCC4Q92889 SNORA12-201ENST00000391162 147 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 RNU2-54P-201ENST00000410299 190 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 SUMO1P4-201ENST00000429430 302 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 RNU2-44P-201ENST00000516795 194 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.09□□□□□ -1.91
ERCC4Q92889 MIR4282-201ENST00000583613 67 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 AL049779.4-201ENST00000604500 156 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 AC010297.1-201ENST00000623948 149 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 AC008873.1-201ENST00000625051 138 ntBASIC3.09□□□□□ -1.91
ERCC4Q92889 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
ERCC4Q92889 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.09□□□□□ -1.91
ERCC4Q92889 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.09□□□□□ -1.92
ERCC4Q92889 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.09□□□□□ -1.92
ERCC4Q92889 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
ERCC4Q92889 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
ERCC4Q92889 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
ERCC4Q92889 RNU1-112P-201ENST00000364401 164 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 Y_RNA.274-201ENST00000364714 101 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 RNU6-740P-201ENST00000364734 105 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 RNU1-138P-201ENST00000384093 164 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 SNORA44-201ENST00000384584 132 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 MIR29B2-201ENST00000385055 81 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
ERCC4Q92889 AL139132.1-201ENST00000431587 344 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 NDUFB4P10-201ENST00000452541 359 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 RNU2-12P-201ENST00000517216 168 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 AC079600.2-201ENST00000550076 130 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 MIR5006-201ENST00000583027 110 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.08□□□□□ -1.92
ERCC4Q92889 AL109918.3-201ENST00000603072 338 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 AC037487.3-201ENST00000606668 112 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 AC006001.4-201ENST00000622243 395 ntBASIC3.08□□□□□ -1.92
ERCC4Q92889 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.08□□□□□ -1.92
ERCC4Q92889 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
ERCC4Q92889 AC135776.4-201ENST00000624300 1904 ntBASIC3.07□□□□□ -1.92
ERCC4Q92889 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
ERCC4Q92889 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
ERCC4Q92889 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 236.4 ms