Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 RNU6-57P-201ENST00000411348 103 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 HMGN2P26-201ENST00000463169 339 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 AC005840.1-201ENST00000498412 377 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 RNA5SP54-201ENST00000516951 92 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 ZNF519P2-201ENST00000557032 169 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 AP003465.2-201ENST00000602571 373 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 AC073413.2-201ENST00000604332 360 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 AL121890.5-201ENST00000620848 304 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 AL078596.1-201ENST00000624856 447 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 MTND5P35-201ENST00000557537 1720 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 Y_RNA.151-201ENST00000363566 112 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 SNORD115-8-201ENST00000363856 82 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 Y_RNA.256-201ENST00000364594 104 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 Y_RNA.287-201ENST00000364853 94 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 SNORD115-38-201ENST00000365037 82 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 SNORA4.2-201ENST00000365313 147 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 RNU6-245P-201ENST00000384020 107 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 Y_RNA.559-201ENST00000384686 107 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 RNU6-95P-201ENST00000384697 107 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 RNU6-331P-201ENST00000384724 107 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 AL590002.1-201ENST00000406554 418 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 RNU6-321P-201ENST00000410912 106 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 COX6CP10-201ENST00000416832 224 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 PCMTD1P1-201ENST00000455560 355 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 MTCO2P30-201ENST00000503662 364 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 TRMT112P2-201ENST00000512910 132 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 AC008269.2-201ENST00000561915 1105 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 snoZ196.1-201ENST00000625269 89 ntBASIC1.16□□□□□ -2.22
TRIM40Q6P9F5 RNU6-451P-201ENST00000362921 107 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 RNU6-1252P-201ENST00000363054 104 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 RNY3P3-201ENST00000363816 102 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 SNORD115-32-201ENST00000364079 82 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 RNU4-9P-201ENST00000364951 139 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 Y_RNA.530-201ENST00000384587 101 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 RNU6-417P-201ENST00000384712 107 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 MRPL35P1-201ENST00000404272 572 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 MIR1253-201ENST00000408273 105 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 AC016909.1-201ENST00000415916 166 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 MTCO3P18-201ENST00000440206 761 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 DAP3P1-201ENST00000441522 278 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 MTND1P11-201ENST00000456661 876 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 RNU7-66P-201ENST00000459469 62 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 RNU1-117P-201ENST00000517041 158 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 MTND1P5-201ENST00000517906 940 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 AC019176.1-201ENST00000518519 225 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 AC024995.1-201ENST00000523014 93 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 AC090821.2-201ENST00000523552 176 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 AC024909.2-201ENST00000553035 286 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 AC005668.1-201ENST00000571142 476 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 MIR4709-201ENST00000577272 72 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 MIR3937-201ENST00000580135 106 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 SNORD11B-201ENST00000607707 90 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 MIR6078-201ENST00000611069 100 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 AL138726.1-201ENST00000614873 333 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 AC099654.12-201ENST00000639868 649 ntBASIC1.15□□□□□ -2.23
TRIM40Q6P9F5 MIR32-201ENST00000384965 70 ntBASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 RNA5SP504-201ENST00000410676 117 ntBASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 AC008134.1-201ENST00000420943 193 ntBASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 AL590632.1-201ENST00000424289 371 ntBASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 Z83846.1-201ENST00000446798 265 ntBASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 RNU6-221P-201ENST00000459541 99 ntBASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 AC025647.1-201ENST00000517879 253 ntBASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 POLR3GP2-201ENST00000588366 668 ntBASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 AL078604.3-201ENST00000615580 211 ntBASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 MIR1321-201ENST00000637766 79 ntBASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.14□□□□□ -2.23
TRIM40Q6P9F5 Y_RNA.38-201ENST00000362617 102 ntBASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 Y_RNA.194-201ENST00000363985 102 ntBASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 RNA5SP467-201ENST00000391274 118 ntBASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 ZNF885P-201ENST00000420174 1098 ntBASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 EIF1P1-201ENST00000421436 341 ntBASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 Z82188.1-201ENST00000436709 154 ntBASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 AL135790.2-201ENST00000437701 267 ntBASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 RPS29P29-201ENST00000456396 171 ntBASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 HMGN1P12-201ENST00000499125 195 ntBASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 RNU6-1198P-201ENST00000516904 67 ntBASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.13□□□□□ -2.23
TRIM40Q6P9F5 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms