Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 SNRPGP7-201ENST00000469016 106 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 MIR3682-201ENST00000581338 84 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AL451064.1-201ENST00000607718 471 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 U6.114-201ENST00000636407 96 ntBASIC0.37□□□□□ -2.35
CCDC88AQ3V6T2 SNORA20.2-201ENST00000383922 131 ntBASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-190P-201ENST00000384154 102 ntBASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-809P-201ENST00000384461 107 ntBASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 MIR549A-201ENST00000385268 96 ntBASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 AL606489.2-201ENST00000433886 234 ntBASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 FABP5P4-201ENST00000437203 171 ntBASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-1198P-201ENST00000516904 67 ntBASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 AP001372.4-201ENST00000524889 472 ntBASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 AL359075.3-201ENST00000613288 217 ntBASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 AL133173.2-201ENST00000614270 90 ntBASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 AC022418.1-201ENST00000624118 445 ntBASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 AC009161.2-201ENST00000624626 138 ntBASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.36□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-833P-201ENST00000363486 107 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-82P-201ENST00000363970 107 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-1127P-201ENST00000384580 107 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-1067P-201ENST00000384752 107 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-440P-201ENST00000390882 105 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 MIR1253-201ENST00000408273 105 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 RNU4-57P-201ENST00000515980 135 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-1178P-201ENST00000516674 107 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AP003461.1-201ENST00000528866 78 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AC004223.2-201ENST00000590309 544 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AC040896.1-201ENST00000613819 479 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 SNORD115-7-201ENST00000365306 82 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-1286P-201ENST00000383871 107 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 MIR32-201ENST00000384965 70 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 MIR605-201ENST00000385078 83 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 MTCO2P23-201ENST00000425216 680 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AL593851.1-201ENST00000426171 157 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AC074290.1-201ENST00000448883 135 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 RNU7-34P-201ENST00000459394 64 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 RNU7-57P-201ENST00000459540 60 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 SCARNA1-201ENST00000517138 166 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AC004832.4-201ENST00000608952 331 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AC137590.2-201ENST00000619709 240 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AC134026.1-201ENST00000623249 2239 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AL078595.3-201ENST00000623815 1166 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 AC019226.2-201ENST00000625973 424 ntBASIC0.35□□□□□ -2.35
CCDC88AQ3V6T2 RNU6-1317P-201ENST00000364582 104 ntBASIC0.34□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-877P-201ENST00000383868 107 ntBASIC0.34□□□□□ -2.36
CCDC88AQ3V6T2 HMGN2P34-201ENST00000437647 269 ntBASIC0.34□□□□□ -2.36
CCDC88AQ3V6T2 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC0.34□□□□□ -2.36
CCDC88AQ3V6T2 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.34□□□□□ -2.36
CCDC88AQ3V6T2 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.34□□□□□ -2.36
CCDC88AQ3V6T2 MTCO3P23-201ENST00000561363 289 ntBASIC0.34□□□□□ -2.36
CCDC88AQ3V6T2 BNIP3P39-201ENST00000601077 554 ntBASIC0.34□□□□□ -2.36
CCDC88AQ3V6T2 AP001596.2-201ENST00000608410 312 ntBASIC0.34□□□□□ -2.36
CCDC88AQ3V6T2 AL627230.5-201ENST00000619807 58 ntBASIC0.34□□□□□ -2.36
CCDC88AQ3V6T2 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 MIR562-201ENST00000384894 95 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 MIR660-201ENST00000385235 97 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 C1DP2-201ENST00000418167 426 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 C1DP4-201ENST00000455429 424 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 TRBVB-201ENST00000477100 408 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 MTND2P32-201ENST00000521584 1038 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 EIF1P4-201ENST00000572664 335 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 MIR4775-201ENST00000581168 75 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-784P-201ENST00000384330 106 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-163P-201ENST00000384396 106 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-45P-201ENST00000384471 107 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 SNORD89-201ENST00000390981 114 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 RNA5SP504-201ENST00000410676 117 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 AC244098.3-201ENST00000424803 96 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 AC092423.1-201ENST00000430165 186 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 NFU1P2-201ENST00000448700 469 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 AC010493.1-201ENST00000513479 292 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 RNU6-197P-201ENST00000516680 100 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 AL360219.1-201ENST00000610230 366 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 uc_338.22-201ENST00000622722 187 ntBASIC0.33□□□□□ -2.36
CCDC88AQ3V6T2 SNORA43.4-201ENST00000629559 138 ntBASIC0.33□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms